Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,257,607 – 17,257,797 |
Length | 190 |
Max. P | 0.991596 |
Location | 17,257,607 – 17,257,726 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.50 |
Mean single sequence MFE | -36.04 |
Consensus MFE | -33.86 |
Energy contribution | -34.06 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.94 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17257607 119 + 23771897 GCGAUGCCCUAAGCCCACAUCAAACAAAAAGCG-GAAAAAUCGGAGCCGGGGACGGAAACUGUCGCCAGGGGGCGCCACAUCAAAUGGUCAAUUAAAUUUCUGGGCAUUUCAUCAAUGUC (.(((((((...((((...............(.-((....)).)..((((.((((....).))).)).))))))((((.......)))).............))))))).)......... ( -33.90) >DroSec_CAF1 141318 120 + 1 GCGAUGCCCUAAGCCCACAUCAAACAAAAAGCGGGAAAAAUCGGAGCUGGGGACGGAAACUGUCGCCAGGGGGCGCCACAUCAAAUGGUCAAUUAAAUUUCUGGGCAUUUCAUCAAUGUC (.(((((((...((((...............(((......)))...((((.((((....).))).)))).))))((((.......)))).............))))))).)......... ( -37.30) >DroSim_CAF1 136143 120 + 1 GCGAUGCCCUAAGCCCACAUCAAACAAAAAGCGGGAAAAAUCGGAGCUGGGGACGGAAACUGUCGCCAGGGGGCGCCACAUCAAAUGGUCAAUUAAAUUUCUGGGCAUUUCAUCAAUGUC (.(((((((...((((...............(((......)))...((((.((((....).))).)))).))))((((.......)))).............))))))).)......... ( -37.30) >DroEre_CAF1 144404 118 + 1 GCGAUGCCCUAAGCCCACAUCAAACAAAAAGCG-GAA-AAUCGGAGCUGGGGACGGGAACUGUCGCCAGGGGGCGCCACAUCAAAUGGUCAAUUAAAUUUCUGGGCAUUUCAUCAAUGUC (.(((((((...((((...............((-...-...))...((((.(((((...))))).)))).))))((((.......)))).............))))))).)......... ( -35.50) >DroYak_CAF1 148502 119 + 1 GCGAUGCCCUAAGCCCACAUCAAACAAAAAGCG-GAAAAAUCGGAGCUGGGGACGGAAACUGUCGCCAGGGGGCGCCACAUCAAAUGGUCAAUUAAAUUUCUGGGCAUUUCAUCAAUGUC (.(((((((...((((...............(.-((....)).)..((((.((((....).))).)))).))))((((.......)))).............))))))).)......... ( -36.20) >consensus GCGAUGCCCUAAGCCCACAUCAAACAAAAAGCG_GAAAAAUCGGAGCUGGGGACGGAAACUGUCGCCAGGGGGCGCCACAUCAAAUGGUCAAUUAAAUUUCUGGGCAUUUCAUCAAUGUC (.(((((((...((((..................((....))....((((.((((....).))).)))).))))((((.......)))).............))))))).)......... (-33.86 = -34.06 + 0.20)
Location | 17,257,686 – 17,257,797 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.92 |
Mean single sequence MFE | -21.58 |
Consensus MFE | -20.82 |
Energy contribution | -20.82 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.96 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991596 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17257686 111 - 23771897 ---------ACGUACCGCAACAAUAUAACAAAUUGUUCGUUUAAAUAAAAAAUGCGUUUCCCAGAAAUUCUGACAAUGGCGACAUUGAUGAAAUGCCCAGAAAUUUAAUUGACCAUUUGA ---------...................(((((.(((...((((((.......(((((((.(((.....))).(((((....)))))..)))))))......))))))..))).))))). ( -21.92) >DroSec_CAF1 141398 111 - 1 ---------ACGUACCGCAACAAUAUAACAAAUUGUUCGUAUAAAUAAAAAAUGCGUUUCCCAGAAAUUCUGACAAUGGCGACAUUGAUGAAAUGCCCAGAAAUUUAAUUGACCAUUUGA ---------...................(((((.(((.((.(((((.......(((((((.(((.....))).(((((....)))))..)))))))......))))))).))).))))). ( -20.82) >DroSim_CAF1 136223 111 - 1 ---------ACGUACCGCAACAAUAUAACAAAUUGUUCGUAUAAAUAAAAAAUGCGUUUCCCAGAAAUUCUGACAAUGGCGACAUUGAUGAAAUGCCCAGAAAUUUAAUUGACCAUUUGA ---------...................(((((.(((.((.(((((.......(((((((.(((.....))).(((((....)))))..)))))))......))))))).))).))))). ( -20.82) >DroEre_CAF1 144482 120 - 1 CCGCAACAUAGCUGCCGCAACAAUAUAACAAAUUGUUCGUAUAAAUAAGAAAUGCGUUUCCCAGAAAUUCUGACAAUGGCGACAUUGAUGAAAUGCCCAGAAAUUUAAUUGACCAUUUGA ..(((.......))).............(((((.(((.((.(((((.......(((((((.(((.....))).(((((....)))))..)))))))......))))))).))).))))). ( -22.02) >DroYak_CAF1 148581 120 - 1 CUACAAAAUAGCUGCCGCAACAAUAUAACAAAUUGUUCGUAUAAAUAAAAAAUGCGUUUCCCAGAAAUUCUGACAAUGGCGACAUUGAUGAAAUGCCCAGAAAUUUAAUUGACCAUUUGA .....((((..(((.((.((((((.......))))))))..............(((((((.(((.....))).(((((....)))))..))))))).)))..)))).............. ( -22.30) >consensus _________ACGUACCGCAACAAUAUAACAAAUUGUUCGUAUAAAUAAAAAAUGCGUUUCCCAGAAAUUCUGACAAUGGCGACAUUGAUGAAAUGCCCAGAAAUUUAAUUGACCAUUUGA ............................(((((.(((.((.(((((.......(((((((.(((.....))).(((((....)))))..)))))))......))))))).))).))))). (-20.82 = -20.82 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:04 2006