Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,929,667 – 1,929,784 |
Length | 117 |
Max. P | 0.779006 |
Location | 1,929,667 – 1,929,765 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.22 |
Mean single sequence MFE | -30.51 |
Consensus MFE | -21.95 |
Energy contribution | -22.12 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.25 |
Mean z-score | -1.77 |
Structure conservation index | 0.72 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1929667 98 - 23771897 AAUACAAAUACCGCCACACCGCAGUUUGGCGGAGUUAAACAGCUGGUUGUGGCGACGAUUGAGACCCCCACUGCCACUCCUGAC----ACGAAUA---------GUCAGGA ....(((....(((((((((((.(((((((...))))))).)).)).)))))))....)))................(((((((----.......---------))))))) ( -31.70) >DroSec_CAF1 51797 107 - 1 AAUACAAAUACCGCCACACCACAGUUUGGCGGAGUUAAACAGCUGGUUGUGGCGACAAUUGAGACCCCCACUGCCACUCCUGAC----ACGAAUAGCCCAUCUAGUCAGGA ......(((.((((((.((....)).)))))).))).......((((.((((.(...........).)))).)))).(((((((----..((........))..))))))) ( -30.30) >DroSim_CAF1 52209 107 - 1 AAUACAAAUACCGCCACACCGCAGUUUGGCGGAGUUAAACAGCUGGUUGUGGCGACAAUUGAGACCCCCACUGCCACUCCUGAC----ACGAAUAGCCCAUCUAGUCAGGA ....(((....(((((((((((.(((((((...))))))).)).)).)))))))....)))................(((((((----..((........))..))))))) ( -31.30) >DroEre_CAF1 53688 107 - 1 AAAACGAAUACCGCCACACCGCAGUUUAACGGCGUUAAACAGCUGGUUGUGGCGACAAUUGAGACUCCUACUGCCACACCGGAC----ACAGACAAAUCAUCUAGUCAGGA ..........((((((((((((.(((((((...))))))).)).)).))))))(((...(((...........((.....))..----.........)))....))).)). ( -28.35) >DroYak_CAF1 53232 107 - 1 AAAACGAAUACCGCCACACCGCAGUUUGGCGGAGUUAAACAGCUGGUUGUGGCGACAAUUGAGACUCCCACUGCCACUCCUGAC----ACAGAUAACUCAUCUAGUCAAGA ......(((.((((((.((....)).)))))).))).......((((.((((.((..........)))))).)))).((.((((----..((((.....)))).)))).)) ( -27.20) >DroAna_CAF1 55925 108 - 1 --AUCAAAUGCCAGCACACCACAGCUUUGCGGGGCAAAGCAUCUGGUUGUGGCCACAAUAGAGACUCCAAGGCCAACUCCUGACGAACAGGAAGAGA-GUGCUAGUAAAGA --......(((.(((((((((..(((((((...)))))))...))))..(((((................)))))..(((((.....))))).....-))))).))).... ( -34.19) >consensus AAAACAAAUACCGCCACACCGCAGUUUGGCGGAGUUAAACAGCUGGUUGUGGCGACAAUUGAGACCCCCACUGCCACUCCUGAC____ACGAAUAGC_CAUCUAGUCAGGA ...........((((((((((..(((((((...)))))))...))).))))))).......................(((((((....................))))))) (-21.95 = -22.12 + 0.17)
Location | 1,929,694 – 1,929,784 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 81.93 |
Mean single sequence MFE | -29.13 |
Consensus MFE | -21.16 |
Energy contribution | -21.97 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.17 |
Mean z-score | -1.31 |
Structure conservation index | 0.73 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536357 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1929694 90 + 23771897 GUGGGGGUCUCAAUCGUCGCCACAACCAGCUGUUUAACUCCGCCAAACUGCGGUGUGGCGGUAUUUGUAUUGUCCGCAGGACGAACGAAC ((((.((.(......))).)))).....(((((...((.((((......)))).)).))))).(((((.((((((...))))))))))). ( -28.30) >DroSec_CAF1 51833 90 + 1 GUGGGGGUCUCAAUUGUCGCCACAACCAGCUGUUUAACUCCGCCAAACUGUGGUGUGGCGGUAUUUGUAUUGUCCGCAGGACGAACGAAC (((((.(...(((.(..(((((((.(((.(.((((.........)))).)))))))))))..).)))...).)))))............. ( -28.70) >DroSim_CAF1 52245 90 + 1 GUGGGGGUCUCAAUUGUCGCCACAACCAGCUGUUUAACUCCGCCAAACUGCGGUGUGGCGGUAUUUGUAUUGUCCGCAGGACGAACGAAC (((((.(...(((.(..(((((((.((.((.((((.........)))).)))))))))))..).)))...).)))))............. ( -30.20) >DroEre_CAF1 53724 90 + 1 GUAGGAGUCUCAAUUGUCGCCACAACCAGCUGUUUAACGCCGUUAAACUGCGGUGUGGCGGUAUUCGUUUUGUCCGCAGGACGAACGAAG ..............(..(((((((.((.((.(((((((...))))))).)))))))))))..)(((((((.((((...))))))))))). ( -34.50) >DroYak_CAF1 53268 90 + 1 GUGGGAGUCUCAAUUGUCGCCACAACCAGCUGUUUAACUCCGCCAAACUGCGGUGUGGCGGUAUUCGUUUUGUCCGUAGGACGAACGAAC .((((...))))..(..(((((((.((.((.((((.........)))).)))))))))))..)(((((((.((((...))))))))))). ( -29.90) >DroAna_CAF1 55964 69 + 1 CUUGGAGUCUCUAUUGUGGCCACAACCAGAUGCUUUGCCCCGCAAAGCUGUGGUGUGCUGGCAUUUGAU--------------------- .(((..(((.(....).)))..))).((((((((..((((((((....))))).).)).))))))))..--------------------- ( -23.20) >consensus GUGGGAGUCUCAAUUGUCGCCACAACCAGCUGUUUAACUCCGCCAAACUGCGGUGUGGCGGUAUUUGUAUUGUCCGCAGGACGAACGAAC ..............((((((((((.((.((.((((.........)))).))))))))))))))(((((.((((((...))))))))))). (-21.16 = -21.97 + 0.81)
Location | 1,929,694 – 1,929,784 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 81.93 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -22.95 |
Energy contribution | -22.50 |
Covariance contribution | -0.45 |
Combinations/Pair | 1.27 |
Mean z-score | -1.59 |
Structure conservation index | 0.83 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1929694 90 - 23771897 GUUCGUUCGUCCUGCGGACAAUACAAAUACCGCCACACCGCAGUUUGGCGGAGUUAAACAGCUGGUUGUGGCGACGAUUGAGACCCCCAC .((((.((((((...))))...........(((((((((((.(((((((...))))))).)).)).)))))))..)).))))........ ( -29.00) >DroSec_CAF1 51833 90 - 1 GUUCGUUCGUCCUGCGGACAAUACAAAUACCGCCACACCACAGUUUGGCGGAGUUAAACAGCUGGUUGUGGCGACAAUUGAGACCCCCAC ((((((.......))))))....(((....(((((((((((.(((((((...))))))).).))).)))))))....))).......... ( -27.00) >DroSim_CAF1 52245 90 - 1 GUUCGUUCGUCCUGCGGACAAUACAAAUACCGCCACACCGCAGUUUGGCGGAGUUAAACAGCUGGUUGUGGCGACAAUUGAGACCCCCAC ((((((.......))))))....(((....(((((((((((.(((((((...))))))).)).)).)))))))....))).......... ( -28.50) >DroEre_CAF1 53724 90 - 1 CUUCGUUCGUCCUGCGGACAAAACGAAUACCGCCACACCGCAGUUUAACGGCGUUAAACAGCUGGUUGUGGCGACAAUUGAGACUCCUAC .((((((.((((...))))..))))))...(((((((((((.(((((((...))))))).)).)).)))))))................. ( -30.30) >DroYak_CAF1 53268 90 - 1 GUUCGUUCGUCCUACGGACAAAACGAAUACCGCCACACCGCAGUUUGGCGGAGUUAAACAGCUGGUUGUGGCGACAAUUGAGACUCCCAC (((((((.((((...))))..)))))))..(((((((((((.(((((((...))))))).)).)).)))))))................. ( -31.30) >DroAna_CAF1 55964 69 - 1 ---------------------AUCAAAUGCCAGCACACCACAGCUUUGCGGGGCAAAGCAUCUGGUUGUGGCCACAAUAGAGACUCCAAG ---------------------.......((((.((.((((..(((((((...)))))))...)))))))))).................. ( -18.90) >consensus GUUCGUUCGUCCUGCGGACAAAACAAAUACCGCCACACCGCAGUUUGGCGGAGUUAAACAGCUGGUUGUGGCGACAAUUGAGACCCCCAC ....(((((.....)))))...........((((((((((..(((((((...)))))))...))).)))))))................. (-22.95 = -22.50 + -0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:37 2006