Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,255,870 – 17,256,026 |
Length | 156 |
Max. P | 0.997129 |
Location | 17,255,870 – 17,255,986 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.56 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -24.98 |
Energy contribution | -25.78 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.33 |
Structure conservation index | 0.87 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17255870 116 - 23771897 UGUGUUCCAUUCGAGACUUCCGGCUGGGCUUCUCGACUGGCCCAUAAUAAUAAACAUGCUAACAACAAUCACGACCCA----GCGAAUCCAUCAAGUUUUGGGUUCGACUUAAAGCCAAA ((((..(((.((((((..(((....)))..)))))).)))..))))...............................(----(((((((((........)))))))).)).......... ( -29.40) >DroSec_CAF1 139585 116 - 1 UGUAUUCCAUUCGAGACUUCCGGCUGGGCUUCUCGACUGGCCCAUAAUAAUAAACAUGCAAACAACAAUCACGACCCA----GCGAAUCCAUCAAGUUUUGGGUUGGACUUAAAGCCAAA .....................(((((((((........))))).........................((.(((((((----((...........))..))))))))).....))))... ( -25.80) >DroSim_CAF1 134421 116 - 1 UGUGUUCCAUUCGAGACUUCCGGCUGGGCUUCUCGACUGGCCCAUAAUAAUAAACAUGCAAACAACAAUCACGACCCA----GCGAAUCCAUCAAGUUUUGGGUUCGACUUAAAGCCAAA ((((..(((.((((((..(((....)))..)))))).)))..))))...............................(----(((((((((........)))))))).)).......... ( -29.40) >DroEre_CAF1 142711 115 - 1 UGUGUUCCAUUCGAGACUUCCGGCUGGGCUGCUCGACUGGCCCAUAAUAAUAAACAUGCAAACAACAAUCACGACCCA----GCGAAUCCAUCAAGUUUUGGGUUCGACU-UCAGCUCAG ((((..(((.(((((...(((....)))...))))).)))..))))..........................((...(----(((((((((........)))))))).))-))....... ( -27.90) >DroYak_CAF1 146686 120 - 1 UGUGUUCCAUUCGAGACUUCCGGCUGGUCUUCUCGACUGGCCCAUAAUAAUAAACAUGCAAACAACAAUCACGACCCAUCGAGCGAAUCCAUCAAGUUUUGGGUUCGACUUUCAGCCAAA ((((..(((.((((((...((....))...)))))).)))..))))...........((............(((....)))((((((((((........)))))))).))....)).... ( -30.60) >consensus UGUGUUCCAUUCGAGACUUCCGGCUGGGCUUCUCGACUGGCCCAUAAUAAUAAACAUGCAAACAACAAUCACGACCCA____GCGAAUCCAUCAAGUUUUGGGUUCGACUUAAAGCCAAA ((((..(((.((((((..(((....)))..)))))).)))..)))).....................................((((((((........))))))))............. (-24.98 = -25.78 + 0.80)
Location | 17,255,908 – 17,256,026 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.31 |
Mean single sequence MFE | -35.46 |
Consensus MFE | -32.74 |
Energy contribution | -33.34 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.11 |
Structure conservation index | 0.92 |
SVM decision value | 2.80 |
SVM RNA-class probability | 0.997129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17255908 118 - 23771897 CUCUUGGGUCUCAGUUAUGGCUCCCGAUUGGACGGCAUUUUGUGUUCCAUUCGAGACUUCCGGCUGGGCUUCUCGACUGGCCCAUAAUAAUAAACAUGCUAACAACAAUCACGACCCA-- ....((((((..(((....)))...(((((...(((((.(((((..(((.((((((..(((....)))..)))))).)))..)))))........))))).....)))))..))))))-- ( -36.50) >DroSec_CAF1 139623 118 - 1 CUCUUGGGUCUCAGUUAUGGCUCCCGAUUGGACGGCAUUUUGUAUUCCAUUCGAGACUUCCGGCUGGGCUUCUCGACUGGCCCAUAAUAAUAAACAUGCAAACAACAAUCACGACCCA-- ....((((((..(((....)))...(((((....(((((((((((((((.((((((..(((....)))..)))))).))).....))).))))).))))......)))))..))))))-- ( -33.00) >DroSim_CAF1 134459 118 - 1 CUCUUGGGUCUCAGUUAUGGCUCCCGAUUGGACGGCAUUUUGUGUUCCAUUCGAGACUUCCGGCUGGGCUUCUCGACUGGCCCAUAAUAAUAAACAUGCAAACAACAAUCACGACCCA-- ....((((((..(((....)))...(((((....((((.(((((..(((.((((((..(((....)))..)))))).)))..)))))........))))......)))))..))))))-- ( -36.00) >DroEre_CAF1 142748 118 - 1 CUCUUGGGUCUCAGUUAUGGGUCCCGAUUGGACGGCAUUUUGUGUUCCAUUCGAGACUUCCGGCUGGGCUGCUCGACUGGCCCAUAAUAAUAAACAUGCAAACAACAAUCACGACCCA-- ....((((((..((((..(((((.(((.((((..((.....))..)))).))).)))))..))))(((((........))))).............................))))))-- ( -36.50) >DroYak_CAF1 146726 120 - 1 CUCUUGGGUCUCCGUUAUGGCUCCCGAUUGGACGGCAUUUUGUGUUCCAUUCGAGACUUCCGGCUGGUCUUCUCGACUGGCCCAUAAUAAUAAACAUGCAAACAACAAUCACGACCCAUC ....((((((...((((((..((.(((.((((..((.....))..)))).))).)).....(((..(((.....)))..)))))))))........((....))........)))))).. ( -35.30) >consensus CUCUUGGGUCUCAGUUAUGGCUCCCGAUUGGACGGCAUUUUGUGUUCCAUUCGAGACUUCCGGCUGGGCUUCUCGACUGGCCCAUAAUAAUAAACAUGCAAACAACAAUCACGACCCA__ ....((((((........((...))(((((....((((.(((((..(((.((((((..(((....)))..)))))).)))..)))))........))))......)))))..)))))).. (-32.74 = -33.34 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:59 2006