Locus 6488

Sequence ID 3L_DroMel_CAF1
Location 17,255,192 – 17,255,312
Length 120
Max. P 0.962065
window10466

overview

Window 6

Location 17,255,192 – 17,255,312
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 99.17
Mean single sequence MFE -41.82
Consensus MFE -40.48
Energy contribution -41.08
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.97
SVM decision value 1.53
SVM RNA-class probability 0.962065
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17255192 120 - 23771897
AACUGUCCUGGGCCUCUGGCCUCAUUUAUUCAUUCGUUUCAUUUGUCUGACUGGAUACUUGGCCUGCAAACUCCGCCGGAGGCCAUUUGGGACGGCUUUUAGUCGGGCGAUGUCGACUUG
..(((((((.((((((((((..((..((((((.(((...(....)..))).))))))..))(....).......))))))))))....))))))).....((((((......)))))).. ( -41.90)
>DroSec_CAF1 138944 120 - 1
AACUGUCCUGGGCCUCUGGCCUCAUUUAUUCAUUCGUUUCAUUUGGCUGACUGGAUACUUGGCCUGCAAACUCCGCCGGAGGCCAUUUGGGACGGCUUUUAGUCGGGCGAUGUCGACUUG
..(((((((.((((((((((..((..((((((.(((((......))).)).))))))..))(....).......))))))))))....))))))).....((((((......)))))).. ( -43.60)
>DroSim_CAF1 133794 120 - 1
AACUGUCCUGGGCCUCUGGCCUCAUUUAUUCAUUCGUUUCAUUUGGCUGACUGGAUACUUGGCCUGCAAACUCCGCCGGAGGCCAUUUGGGACGGCUUUUAGUCGGGCGAUGUCGACUUG
..(((((((.((((((((((..((..((((((.(((((......))).)).))))))..))(....).......))))))))))....))))))).....((((((......)))))).. ( -43.60)
>DroEre_CAF1 142094 120 - 1
AACUGUCCUGGGCCUCUGGCCUCAUUUAUUCAUUCGUUUCAUUUGGCUGACUGGAUACUUGGCCUGCAAACUCCGCCGGAGGCCAUUUGGGACGGCUUUUAGUCGGGCGAUGUCUACUUG
..(((((((.((((((((((..((..((((((.(((((......))).)).))))))..))(....).......))))))))))....))))))).....(((.((((...))))))).. ( -40.00)
>DroYak_CAF1 145979 120 - 1
AACUGUCCUGGGCCUCUGGCCUCAUUUAUUCAUUCGUUUCAUUUGGCUGACUGGAUACUUGGCCUGCAAACUCCGCCGGAGGCCAUUUGGGACGGCUUUUAGUCGGGCGAUGUCUACUUG
..(((((((.((((((((((..((..((((((.(((((......))).)).))))))..))(....).......))))))))))....))))))).....(((.((((...))))))).. ( -40.00)
>consensus
AACUGUCCUGGGCCUCUGGCCUCAUUUAUUCAUUCGUUUCAUUUGGCUGACUGGAUACUUGGCCUGCAAACUCCGCCGGAGGCCAUUUGGGACGGCUUUUAGUCGGGCGAUGUCGACUUG
..(((((((.((((((((((..((..((((((.(((((......))).)).))))))..))(....).......))))))))))....))))))).....((((((......)))))).. (-40.48 = -41.08 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:57 2006