Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,255,041 – 17,255,161 |
Length | 120 |
Max. P | 0.659177 |
Location | 17,255,041 – 17,255,161 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.03 |
Mean single sequence MFE | -30.54 |
Consensus MFE | -26.40 |
Energy contribution | -27.00 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.86 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659177 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17255041 120 + 23771897 AAGGCCGGCCCAAAUGAAUAUGUAAGCGGUCCCACUUGGCCAUUUACGUGUACAAUUGAUGUGGUUUGAUUUCGUUAGGGGCAUUGCCAACUACAUACUACAUAAACACAAUAACAAGCA ..(((..((((.((((((((((((((.((((......)))).)))))))))..(((..(......)..))))))))..))))...)))................................ ( -29.80) >DroSec_CAF1 138800 113 + 1 GAGGCCGCCCCAAAUGAAUAUGUAAGCGGUCCCACUUGGCCAUUUACGUGUACAAUUGAUGUGGUUUGAUUUCGUUAGGGGCAUUGCCAACUA-------CAUAAACACAAUAACAAGCA ..(((.(((((.((((((((((((((.((((......)))).)))))))))..(((..(......)..)))))))).)))))...))).....-------.................... ( -32.90) >DroSim_CAF1 133650 113 + 1 GAGGCCGGCCCAAAUGAAUAUGUAAGCGGUCCCACUUGGCCAUUUACGUGUACAAUUGAUGUGGUUUGAUUUCGUUAGGGGCAUUGCCAACUA-------CAUAAACACAAUAACAAGCA ..(((..((((.((((((((((((((.((((......)))).)))))))))..(((..(......)..))))))))..))))...))).....-------.................... ( -29.80) >DroEre_CAF1 141957 113 + 1 GAGGACGGCCCAAAUGAAUAUGUAAGCGGUCCCACUUGGCCGUUUACGUGUACAAUUGAUGUGGUUUGAUUUCGUUAGGGGCAUUGCCAACUA-------CAUAAACACAAUAACAAGCA ..((...((((.(((((((((((((((((((......))))))))))))))..(((..(......)..))))))))..))))....)).....-------.................... ( -33.10) >DroYak_CAF1 145826 113 + 1 GAGGACGGCCCAAAUGAAUAUGUAAGCGGUCCCACUUGGCCAUUUACGUGUACAAUUGAUGUGGUUUGAUUUCGUUAGGGGCAUUGCCAACUA-------CAUAAACACAAUAACAAGCA ..((...((((.((((((((((((((.((((......)))).)))))))))..(((..(......)..))))))))..))))....)).....-------.................... ( -27.10) >consensus GAGGCCGGCCCAAAUGAAUAUGUAAGCGGUCCCACUUGGCCAUUUACGUGUACAAUUGAUGUGGUUUGAUUUCGUUAGGGGCAUUGCCAACUA_______CAUAAACACAAUAACAAGCA ..(((..((((.((((((((((((((.((((......)))).)))))))))..(((..(......)..))))))))..))))...)))................................ (-26.40 = -27.00 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:55 2006