Locus 6482

Sequence ID 3L_DroMel_CAF1
Location 17,252,862 – 17,252,952
Length 90
Max. P 0.542321
window10453

overview

Window 3

Location 17,252,862 – 17,252,952
Length 90
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 83.48
Mean single sequence MFE -18.96
Consensus MFE -17.13
Energy contribution -17.13
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.84
Structure conservation index 0.90
SVM decision value 0.02
SVM RNA-class probability 0.542321
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17252862 90 + 23771897
CUCGUUAGGGGCAAUUGCACAUCACCUGUGCGAAUUAUUUCAAAACAAUGAGGAUGACAAAACAAUUAACUUUUAAGGAGUCAUUAAUUA---------------------------
(((.(((((((...(((((((.....))))))).((((((((......))).)))))............))))))).)))..........--------------------------- ( -17.30)
>DroSec_CAF1 136664 117 + 1
CUCGUUAGGGGCAAUUGCACAACACCUGUGCGAAUUAUUUCAAAACAAUGAGGCUGACAAAACAAUUAACUUUUAAGGAGUCAUUAAUUAAACCAAAAGACUCGAACAAUGCAGAAU
.(((((((......(((((((.....)))))))....(((((......))))))))))...................(((((................)))))))............ ( -19.79)
>DroSim_CAF1 131458 117 + 1
CUCGUUAGGGGCAAUUGCACAACACCUGUGCGAAUUAUUUCAAAACAAUGAGGCUGACAAAACAAUUAACUUUUAAGGAGUCAUUAAUUAAACCAAAAGACUCGAACAAUGCAGAAU
.(((((((......(((((((.....)))))))....(((((......))))))))))...................(((((................)))))))............ ( -19.79)
>consensus
CUCGUUAGGGGCAAUUGCACAACACCUGUGCGAAUUAUUUCAAAACAAUGAGGCUGACAAAACAAUUAACUUUUAAGGAGUCAUUAAUUAAACCAAAAGACUCGAACAAUGCAGAAU
(((.(((((((...(((((((.....)))))))....(((((......)))))................))))))).)))..................................... (-17.13 = -17.13 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:44 2006