Locus 648

Sequence ID 3L_DroMel_CAF1
Location 1,920,966 – 1,921,081
Length 115
Max. P 0.791458
window990

overview

Window 0

Location 1,920,966 – 1,921,081
Length 115
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 79.84
Mean single sequence MFE -40.98
Consensus MFE -25.96
Energy contribution -28.02
Covariance contribution 2.06
Combinations/Pair 1.13
Mean z-score -1.84
Structure conservation index 0.63
SVM decision value 0.59
SVM RNA-class probability 0.791458
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1920966 115 + 23771897
AGCGAAUUCAACUGGUUUAGAUCGGUGGCCAUUGGACUGAGCCGGAUUGCGCCGGUUUGGGCCAGAAAUUCGCCAUCGCUCGGCGAAUCUUCGAAGAGC---AGCUUCC-AAGUCUCCG
.(((((((...((((((((((((((((....((((......))))....)))))))))))))))).)))))))....((((..(((....)))..))))---.......-......... ( -43.10)
>DroPse_CAF1 50566 101 + 1
AGCGAAUUCAACUGGUUUAUAUCAGUGGCUUGUGGCUUGAGCCGGAUUGCGCCGGUUUUGGCCAGAAAUUUGCCAUCCAU---CGCAUCUGAAGAGAGC---UA------------CUG
.((((.....((((((....))))))(((((.(((((.(((((((......))))))).))))).))....))).....)---))).(((....)))..---..------------... ( -35.40)
>DroEre_CAF1 44895 115 + 1
AGCGAAUUCAACUGGUUUAGAUCGGUGGCCAUUGGACUGAGCCGGAUUGCGCCGGUUUUGGCCAGAAAUUCGCCAUCGCUCGGCGAAUCUUCGAAGAGC---AGCAUCC-AAGUCUCCG
.(((((((...(((((..(((((((((....((((......))))....)))))))))..))))).)))))))....((((..(((....)))..))))---.......-......... ( -40.20)
>DroYak_CAF1 44377 115 + 1
AGCGAAUUUAACUGGUUUAGAUCGGUGGCCAUUGGACUGAGCCGGAUUGCGCCGGUUUUGGCCAGAAAUUCGCCAUCGCUCGGCGAAUCUUCGAAGAGC---AGCUUCC-AAGUGGCCG
.((((((((..(((((..(((((((((....((((......))))....)))))))))..)))))))))))))....((((..(((....)))..))))---.(((...-....))).. ( -42.60)
>DroAna_CAF1 47316 119 + 1
AGCGAAUUCAACUGGUUUAGAUCGGUGACCAGUGAACUGAGCUGGAUUGCGCCGGUUUUGGCCAGAAAUUCGCCAUUGCCUGGCGAAGAUGCGGAGAGCGCCAGCCUCCCACUUUUCAG
.(((((((...(((((..(((((((((.(((((.......)))))....)))))))))..))))).)))))))......((((.((((.((.((((.((....)))))))))))))))) ( -49.20)
>DroPer_CAF1 49818 101 + 1
AGCGAAUUCAACUGGUUUAUAUCAGUGGCUUGUGGCUUGAGCCGGAUUGCGCCGGUUUUGGCCAGAAAUUUGCCAUCCAU---CGCAUCUGAAGAGAGC---UA------------CUG
.((((.....((((((....))))))(((((.(((((.(((((((......))))))).))))).))....))).....)---))).(((....)))..---..------------... ( -35.40)
>consensus
AGCGAAUUCAACUGGUUUAGAUCGGUGGCCAGUGGACUGAGCCGGAUUGCGCCGGUUUUGGCCAGAAAUUCGCCAUCGCUCGGCGAAUCUGCGAAGAGC___AGC_UCC_AAGU_UCCG
.(((((((...(((((..(((((((((.....(((......))).....)))))))))..))))).)))))))....((((..(((....)))..)))).................... (-25.96 = -28.02 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:33 2006