| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,247,031 – 17,247,151 |
| Length | 120 |
| Max. P | 0.648997 |
| Location | 17,247,031 – 17,247,151 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.31 |
| Mean single sequence MFE | -39.30 |
| Consensus MFE | -35.80 |
| Energy contribution | -35.64 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17247031 120 + 23771897 UUGCUGCUGCUGGUCGAAAGGUAACAAGAUUAUCUGUGUCAAGACAAUUAUUUCCGCCGCAUCAGCAGCGACGUUCUGUUUGGCCAGCAAUCGUGCGUGCGGCAGCGUGGAAUGCCAAAU ..((((((((((((((((.((.(((..((((.(((......))).)))).....(((.((....)).)))..))))).))))))))(((....)))..)))))))).(((....)))... ( -41.50) >DroSec_CAF1 130884 117 + 1 UUGCU---GCUGGUCGAAAGGUAACAAGAUUAUCUGUGUCAAGACAAUUAUUUCCGCCGCAUCAGCAGCGACGUUCUGUUUGGCCAGCAAUCGUGCGUGCGGCAGCGUGGAAUGCCAAAU (((((---((((((((...((......((((.(((......))).))))....))..)).)))))))))))(((((..(...(((.(((........))))))...)..)))))...... ( -36.50) >DroSim_CAF1 124750 120 + 1 UUGCUGCUGCUGGUCGAAAGGUAACAAGAUUAUCUGUGUCAAGACAAUUAUUUCCGCCGCAUCAGCAGCGACGUUCUGUUUGGCCAGCAAUCGUGCGUGCGGCAGCGUGGAAUGCCAAAU ..((((((((((((((((.((.(((..((((.(((......))).)))).....(((.((....)).)))..))))).))))))))(((....)))..)))))))).(((....)))... ( -41.50) >DroEre_CAF1 134023 117 + 1 UUGCU---GCUGGUCGAAAGGUAACAAGAUUAUCUGUGUCAAGACAAUUAUUUCCGCCGCAUCAGCAGCGUCGUUCUGUUUGGCCAGCAAUCGUGCGUGCGGCAGCGCGGAAUGCCAAAU ..(((---((((((((...((......((((.(((......))).))))....))..)).)))))))))(.((((((((...(((.(((........))))))...)))))))).).... ( -39.10) >DroYak_CAF1 137640 117 + 1 UUGCU---GCUGGCCGAAAGGUAACAAGAUUAUCUGUGUCAAGACAAUUAUUUCCGCCGCAUCAGCAGCGUCGUUCUGUUUGGCCAGCAAUCGUGCGUGCGGCAGCGUGGAAUGCCAAAU ..(((---((((((((((.((.(((..((((.(((......))).)))).....(((.((....)).)))..))))).))))))))))).....))....((((........)))).... ( -37.90) >consensus UUGCU___GCUGGUCGAAAGGUAACAAGAUUAUCUGUGUCAAGACAAUUAUUUCCGCCGCAUCAGCAGCGACGUUCUGUUUGGCCAGCAAUCGUGCGUGCGGCAGCGUGGAAUGCCAAAU ..((....((((((((((.((.(((..((((.(((......))).)))).....(((.((....)).)))..))))).))))))))))......))....((((........)))).... (-35.80 = -35.64 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:29 2006