Locus 6474

Sequence ID 3L_DroMel_CAF1
Location 17,245,596 – 17,245,715
Length 119
Max. P 0.580791
window10430

overview

Window 0

Location 17,245,596 – 17,245,715
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.87
Mean single sequence MFE -27.24
Consensus MFE -23.02
Energy contribution -23.22
Covariance contribution 0.20
Combinations/Pair 1.13
Mean z-score -1.32
Structure conservation index 0.85
SVM decision value 0.09
SVM RNA-class probability 0.580791
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17245596 119 - 23771897
CAGCCCGUCCUCUCCAUUUGCGCCCUGUUUGCUCAGCUUCGGGGAACAUCUCAAGUCCUUAAUGGCUAAGGCAAACAUUCGCA-GCAGCCCCCAUCAUUAUUUUCACACAAACAAUAACA
.................(((((...((((((((.((((..(((((.(.......))))))...))))..))))))))..))))-)................................... ( -22.50)
>DroSec_CAF1 129475 118 - 1
CAGCCCGUCCUCUCCAUUUGCGCCUUGUUAGCUCAGCUUCGGGGAACAUCUCAAGUCCUUAAUGGCUAAGGCAAACAUGCGCA-GCGGGCCCC-UCAUUAUUUUCGCACAAACAAUAACA
..((((((..........(((((..((((.(((.((((..(((((.(.......))))))...))))..))).)))).)))))-))))))...-.......................... ( -31.90)
>DroSim_CAF1 123330 118 - 1
CAGCCCGUCCUCUCCAUUUGCGCCUUGUUUGCUCAGCUUCGGGGAACAUCUCAAGUCCUUAAUGGCUAAGGCAAACAUGCGCA-GCAGCCCCC-UCAUUAUUUUCGCACAAACAAUAACA
.................((((((..((((((((.((((..(((((.(.......))))))...))))..)))))))).)))))-)........-.......................... ( -26.80)
>DroEre_CAF1 132620 118 - 1
CAGCCCGUCCUCUUCAUUUGCGCCUUGUUUGCCCAGCUCCGGGGAACAUCUCAAGUCCUUAAUGGCUAAGGCAAACAUGCGCA-GCAGCCCCC-UUAUUAUUUUCGCACAAACAAUAACA
.................((((((..((((((((.((((..(((((.(.......))))))...))))..)))))))).)))))-)........-.......................... ( -28.00)
>DroYak_CAF1 136240 119 - 1
CAGCCCGUCCUCUUCAUUUGCGUCUUGUUUGCGCAGCUUCGAGGAACAUCUCAAGUCCUUAAUGGCUAAGGCAAACAUGCGCAGGCAGCCCCC-UCAUUAUUUUCGCACAAACAAUAACA
..(((.(.......)...(((((..(((((((..((((..(((((.(.......))))))...))))...))))))).)))))))).......-.......................... ( -27.00)
>consensus
CAGCCCGUCCUCUCCAUUUGCGCCUUGUUUGCUCAGCUUCGGGGAACAUCUCAAGUCCUUAAUGGCUAAGGCAAACAUGCGCA_GCAGCCCCC_UCAUUAUUUUCGCACAAACAAUAACA
..................(((((..((((((((.((((..(((((.(.......))))))...))))..)))))))).)))))..................................... (-23.02 = -23.22 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:22 2006