Locus 6473

Sequence ID 3L_DroMel_CAF1
Location 17,245,157 – 17,245,271
Length 114
Max. P 0.909471
window10429

overview

Window 9

Location 17,245,157 – 17,245,271
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.14
Mean single sequence MFE -35.70
Consensus MFE -28.98
Energy contribution -29.54
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.94
Structure conservation index 0.81
SVM decision value 1.07
SVM RNA-class probability 0.909471
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17245157 114 - 23771897
CAGGUUGUCGCUGCUGCAGGCGGGCUUUCCAAUUCCCUGCACCUACACGGUCAGCAGAAAAAUGUCUUUAUAUGCGGAAAGCCACAUGGCUUCCUGGCAGCCUCGUCCCUCC------CU
.((((((((.((((((((((.(((........))))))))(((.....))).)))))..................((((.(((....))))))).)))))))).........------.. ( -37.60)
>DroSec_CAF1 129036 114 - 1
CAGGUUGUCGCUGCUGCAGGCGGGCUUUCCAAUUCCCUGCACCUACACGGUCAGCAGAAAAAUGUCUUUAUAUGCGGAAAGCCACAUGGCUUCCUGGCAGCCUCAUCCCUCC------CC
.((((((((.((((((((((.(((........))))))))(((.....))).)))))..................((((.(((....))))))).)))))))).........------.. ( -37.60)
>DroSim_CAF1 122889 114 - 1
CAGGUUGUCGCUGCUGCAGGCGGGCUUUCCAAUUCCCUGCACCUACACGGUCAGCAGAAAAAUGUCUUUAUAUGCGGAAAGCCACAUGGCUUCCUGGCAGCCUCAUCCCUCC------CC
.((((((((.((((((((((.(((........))))))))(((.....))).)))))..................((((.(((....))))))).)))))))).........------.. ( -37.60)
>DroEre_CAF1 132199 107 - 1
CUGGUUGUCGCUGUUGCAGCCGGGCUUUCCAAUUCCCUGCACCUACACGGUCAGCAGAAAAAUGUCUUUAUAUGCGGAAAGCCACAUGGCUGCU-------------CCACCUCCCCACU
.(((..(..(.((..((((((.((((((((......(((((((.....)))..))))......((........))))))))))....)))))).-------------.)))..).))).. ( -35.20)
>DroYak_CAF1 135786 101 - 1
CAGGUUGUCGCUGUUGCAGCCGGGCUUUCCGAUUCCCUGCACCUACACGGUCAGCAGAAAAAUGUCUUUAUAUGCGGAAAGCCACAUGGCUUCU-------------CCUCC------GU
.(((.....((....))((((.(((((((((.....(((((((.....)))..))))....((((....)))).)))))))))....))))...-------------)))..------.. ( -30.50)
>consensus
CAGGUUGUCGCUGCUGCAGGCGGGCUUUCCAAUUCCCUGCACCUACACGGUCAGCAGAAAAAUGUCUUUAUAUGCGGAAAGCCACAUGGCUUCCUGGCAGCCUC_UCCCUCC______CU
((((..(((((....)).....((((((((......(((((((.....)))..))))......((........))))))))))....)))..))))........................ (-28.98 = -29.54 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:21 2006