| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,241,600 – 17,241,698 |
| Length | 98 |
| Max. P | 0.632967 |
| Location | 17,241,600 – 17,241,698 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.51 |
| Mean single sequence MFE | -23.73 |
| Consensus MFE | -17.91 |
| Energy contribution | -17.03 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.632967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17241600 98 - 23771897 ACAAUACUGUCUCACCCCAAAAUUUCUCAGACCAUCUGCAGUAUUUCUCUGCACGUGCAUCUACUGUAUAGAUUCUGAGGAUUAUAAAUCAAGUCAAG---------------------- .......((.((...........((((((((..((((((((.......))))..(((((.....)))))))))))))))))..........)).))..---------------------- ( -19.40) >DroSec_CAF1 125438 120 - 1 ACAAUACUGUCUCACCCCGAAAUUUUUCAGACCAUCUGCAGUGUUACUCUGUACGUGCAUCUGCUGUACAGUUUCUGAGGAUUAUAAAUCAAGUCGAUGACUUCAUUUAUAAAAAGUGUG ...(((((...............((((((((.(((.....))).....(((((((.((....)))))))))..))))))))((((((((.(((((...))))).))))))))..))))). ( -27.60) >DroSim_CAF1 119353 114 - 1 ACAAUACUGUCUCACCCCGAAAUUUCUCAGACCACCUGCAGUGUUACUCUGUACGUGCAUCUGCUGUACAGUUUCUGAGGAUUAUAAAUCAAGUCAAUGACUUUAAGU-----AAGU-UG ....((((...............((((((((.(((.....))).....(((((((.((....)))))))))..)))))))).........(((((...)))))..)))-----)...-.. ( -24.20) >consensus ACAAUACUGUCUCACCCCGAAAUUUCUCAGACCAUCUGCAGUGUUACUCUGUACGUGCAUCUGCUGUACAGUUUCUGAGGAUUAUAAAUCAAGUCAAUGACUU_A__U_____AAGU_UG .......((.((...........((((((((.....(((((.......))))).(((((.....)))))....))))))))..........)).))........................ (-17.91 = -17.03 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:14 2006