Locus 6469

Sequence ID 3L_DroMel_CAF1
Location 17,241,281 – 17,241,390
Length 109
Max. P 0.756982
window10421

overview

Window 1

Location 17,241,281 – 17,241,390
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.15
Mean single sequence MFE -35.52
Consensus MFE -26.10
Energy contribution -27.10
Covariance contribution 1.00
Combinations/Pair 1.10
Mean z-score -1.88
Structure conservation index 0.73
SVM decision value 0.49
SVM RNA-class probability 0.756982
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17241281 109 + 23771897
AAAGCUGAGCAAAUAUGCAACCAGUUCGAGUGGCUAUCUGGGAUUGCUCUGCUUUCGACACACAGUGAUCACUGGCAAUGCGG-----------UGCAUAUGUUCGCAGAUAAUUUAUUA
...((.(((((..((((((.(((((((.((.......)).)))))((..((((...(((((...))).))...))))..))))-----------)))))))))))))............. ( -29.90)
>DroSec_CAF1 125203 114 + 1
AAAGCUGAGCAAAUAUGCAACCAGUUCGAGUGGCAAUCUGGGAUUGCUCUGCUUUCGACGCACAGUGAUCACUGGCAAUGCGGAAAACUUGCAGGGCAUAUGUUUGCAGAUCAU------
........(((((((((...((((.............))))...(((((((((((((..((.((((....))))))....))))).....))))))))))))))))).......------ ( -35.02)
>DroSim_CAF1 119109 120 + 1
AAAGCUGAGCAAAUAUGCAACCAGUUCGAGUGGCAAUCUGGGAUUGCUCUGCUUUCGACGCACAGUGAUCACUGGCAAUGCGGAAAACCUGCAGUGCAUAUGUUUGCAGAUCAUUUAUUA
..(((((.(((....)))...))))).(((((((((((...))))))(((((....((((..((((....))))(((.(((((.....))))).)))...)))).))))).))))).... ( -34.50)
>DroEre_CAF1 128342 119 + 1
AAGGCUGAGCAAAUAUGCAACCGGUUCGAGUGCCAAUCUGGGAUUGCUCUGCUUAAGACGCACAGUGAUCACUGGCGAAGCGGGAAAUCCGCAGUGCAUAUUUUU-CAAAUAAAUUCUUA
.....((((.(((((((((...(((......)))...((((((((..(((((((....(((.((((....)))))))))))))).))))).))))))))))))))-))............ ( -39.60)
>DroYak_CAF1 131789 119 + 1
AAAGCUGGGCAAAUAUGCAACCAGUUCGAGUGGCAUUCUGGGAUUGCUCUGCUUAAGCAGCACAGUGAUCACUGGCGAUGCGGAAAAGCUGCAGUGCAUAUGUUU-CAGAUAAGUUAUUA
....(((((...(((((((..(((((....(.((((((..((((..((.((((.....)))).))..))).)..).))))).)...)))))...)))))))..))-)))........... ( -38.60)
>consensus
AAAGCUGAGCAAAUAUGCAACCAGUUCGAGUGGCAAUCUGGGAUUGCUCUGCUUUCGACGCACAGUGAUCACUGGCAAUGCGGAAAACCUGCAGUGCAUAUGUUUGCAGAUAAUUUAUUA
....(((.....(((((((.(((((.(.((.......)).)(((..((.(((.......))).))..))))))))....((((.....))))..))))))).....)))........... (-26.10 = -27.10 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:13 2006