Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,240,444 – 17,240,564 |
Length | 120 |
Max. P | 0.562093 |
Location | 17,240,444 – 17,240,564 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.00 |
Mean single sequence MFE | -32.22 |
Consensus MFE | -32.44 |
Energy contribution | -32.04 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -1.09 |
Structure conservation index | 1.01 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562093 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17240444 120 - 23771897 GCAAUCCCCAGCUGUCCGUGGGAUAGCCAGGAUUAACAGUUCUGCGAAAUGAAAUGGAUAGGACGUAAAAACGUUAUGCCGGCCAAAAGGCACACAACAGUUUAAGCACUCGCAUUGCCA ..(((((...(((((((...)))))))..)))))....((..(((((.......(((....(((((....)))))...)))(((....)))..................)))))..)).. ( -33.20) >DroSec_CAF1 124365 120 - 1 GCAAUCCCCAGCUGUCCGUGGGAUAGCCAGGAUUAACAGUUCUGCGAAAUGAAAUGGAUAGGACGUAAAAACGUUAUGCCGGCCAAAAGGCAUACAACAGUAUAAGCACUCGCAUUGCCA ..(((((...(((((((...)))))))..)))))....((..(((((.......(((....(((((....)))))...)))(((....)))((((....))))......)))))..)).. ( -33.80) >DroSim_CAF1 118273 120 - 1 GCAAUCCCCAGCUGUCCGUGGGAUAGCCAGGAUUAACAGUUCUGCGAAAUGAAAUGGAUAGGACGUAAAAACGUUAUGCCGGCCAAAAGGCAUACAACAGUUUAAGCACUCGCAUUGCCA ..(((((...(((((((...)))))))..)))))....((..(((((..((...(((((.((((((....)))))(((((........)))))....).)))))..)).)))))..)).. ( -33.20) >DroEre_CAF1 127526 120 - 1 GCAAUCCCCAGCUGUCCGUGGGAUAGUCAGGAUUAACAGUUCUGCGAAAUGAAAUGGAUAGGACGUAAAAACGUUAUGCCGGCCAAAAGGCAUACAACAGUUUAAGCACUUGCACUGCCA ..(((((...(((((((...)))))))..)))))....((..(((((..((...(((((.((((((....)))))(((((........)))))....).)))))..)).)))))..)).. ( -29.50) >DroYak_CAF1 130911 120 - 1 GCAAUCCCCAGCUGUCCGUGGGAUAGCCAGGAUUAACAGUUCUGCGAAAUGAAAUGGAUAGGACGUAAAAACGUUAUGCCGGCCAAAAGGCAUACAACAGUUUAAGCACUUGCACUGCCA (((((((((((((((((...)))))))((((((.....))))))..........)))...))).((..((((((((((((........))))))..)).))))..))..))))....... ( -31.40) >consensus GCAAUCCCCAGCUGUCCGUGGGAUAGCCAGGAUUAACAGUUCUGCGAAAUGAAAUGGAUAGGACGUAAAAACGUUAUGCCGGCCAAAAGGCAUACAACAGUUUAAGCACUCGCAUUGCCA ..(((((...(((((((...)))))))..)))))....((..(((((.......(((....(((((....)))))...)))(((....)))..................)))))..)).. (-32.44 = -32.04 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:12 2006