Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,238,061 – 17,238,170 |
Length | 109 |
Max. P | 0.999528 |
Location | 17,238,061 – 17,238,170 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.23 |
Mean single sequence MFE | -42.44 |
Consensus MFE | -39.60 |
Energy contribution | -39.60 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.16 |
Structure conservation index | 0.93 |
SVM decision value | 3.60 |
SVM RNA-class probability | 0.999438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17238061 109 + 23771897 -----------GUGGUUCCUGGUGCCCAGGAUCCCGGAGCAGUAGGUAGCCUGAUGCUUGGUUCUGUUGUGGCUUAUAGUCGCGUCUGAUUAAUGAACCGUGGCUAUGUAGCCGGAUUAA -----------..((.((((((...)))))).))(.(((((.((((...)))).))))).)......(.(((((((((((((((((........))..)))))))))).))))).).... ( -40.10) >DroSec_CAF1 122058 109 + 1 -----------GUGGCUCCUGGUGCCCAGGAUCCCGGAGCAGUAGGUAGCCUGAUGCUUGGUUUUGUUGUGGCUUAUAGUCGCGUCUGAUUAAUGAACCGUGGCUAUGUAGCCGGAUUAA -----------..((((((((.(((((.(....).)).))).)))).))))................(.(((((((((((((((((........))..)))))))))).))))).).... ( -40.30) >DroSim_CAF1 115936 109 + 1 -----------GUGGCUCCUGGUGCCCAGGAUCCCGGAGCAGUAGGUAGCCUGAUGCUUGGUUUUGUUGUGGCUUAUAGUCGCGUCUGAUUAAUGAACCGUGGCUAUGUAGCCGGAUUAA -----------..((((((((.(((((.(....).)).))).)))).))))................(.(((((((((((((((((........))..)))))))))).))))).).... ( -40.30) >DroEre_CAF1 125285 112 + 1 --------CUGGUGGCUCCUGGUGCCCAGGAUCCCGGAGCACUAGGUAGCCUGAUGCUUGGUUUUGUUGUGGCUUAUAGUCGCGUCUGAUUAAUGAACCGUGGCUAUGUAGCCGGAUUAA --------.....((((((((((((((.(....).)).)))))))).))))................(.(((((((((((((((((........))..)))))))))).))))).).... ( -44.20) >DroYak_CAF1 128507 120 + 1 GGCUGCUGCUGGUGGCUCCUGGUGCCCAGGAUCCCAGAGCAGUAGGUAGCCUGAUGCUUGGUUUUGUUGUGGCUUAUAGUCGCGUCUGAUUAAUGAACCGUGGCUAUGUAGCCGGAUUAA .((((((.((((.((.((((((...))))))))))))))))))....((((........))))....(.(((((((((((((((((........))..)))))))))).))))).).... ( -47.30) >consensus ___________GUGGCUCCUGGUGCCCAGGAUCCCGGAGCAGUAGGUAGCCUGAUGCUUGGUUUUGUUGUGGCUUAUAGUCGCGUCUGAUUAAUGAACCGUGGCUAUGUAGCCGGAUUAA .............((.((((((...)))))).))(.(((((.((((...)))).))))).)......(.(((((((((((((((((........))..)))))))))).))))).).... (-39.60 = -39.60 + 0.00)
Location | 17,238,061 – 17,238,170 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.23 |
Mean single sequence MFE | -31.60 |
Consensus MFE | -29.22 |
Energy contribution | -29.26 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.24 |
Structure conservation index | 0.92 |
SVM decision value | 3.69 |
SVM RNA-class probability | 0.999528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17238061 109 - 23771897 UUAAUCCGGCUACAUAGCCACGGUUCAUUAAUCAGACGCGACUAUAAGCCACAACAGAACCAAGCAUCAGGCUACCUACUGCUCCGGGAUCCUGGGCACCAGGAACCAC----------- .......((((....))))..(((((....................((((...................))))..((..(((.((((....)))))))..)))))))..----------- ( -27.51) >DroSec_CAF1 122058 109 - 1 UUAAUCCGGCUACAUAGCCACGGUUCAUUAAUCAGACGCGACUAUAAGCCACAACAAAACCAAGCAUCAGGCUACCUACUGCUCCGGGAUCCUGGGCACCAGGAGCCAC----------- .......((((..((((.(.((..............)).).)))).))))...................((((.(((..(((.((((....)))))))..)))))))..----------- ( -30.84) >DroSim_CAF1 115936 109 - 1 UUAAUCCGGCUACAUAGCCACGGUUCAUUAAUCAGACGCGACUAUAAGCCACAACAAAACCAAGCAUCAGGCUACCUACUGCUCCGGGAUCCUGGGCACCAGGAGCCAC----------- .......((((..((((.(.((..............)).).)))).))))...................((((.(((..(((.((((....)))))))..)))))))..----------- ( -30.84) >DroEre_CAF1 125285 112 - 1 UUAAUCCGGCUACAUAGCCACGGUUCAUUAAUCAGACGCGACUAUAAGCCACAACAAAACCAAGCAUCAGGCUACCUAGUGCUCCGGGAUCCUGGGCACCAGGAGCCACCAG-------- .......((((....))))..(((..........((.((........................)).)).((((.(((.((((.((((....)))))))).))))))))))..-------- ( -34.76) >DroYak_CAF1 128507 120 - 1 UUAAUCCGGCUACAUAGCCACGGUUCAUUAAUCAGACGCGACUAUAAGCCACAACAAAACCAAGCAUCAGGCUACCUACUGCUCUGGGAUCCUGGGCACCAGGAGCCACCAGCAGCAGCC .......((((..((((.(.((..............)).).)))).))))............(((.....))).....(((((((((..((((((...))))))....)))).))))).. ( -34.04) >consensus UUAAUCCGGCUACAUAGCCACGGUUCAUUAAUCAGACGCGACUAUAAGCCACAACAAAACCAAGCAUCAGGCUACCUACUGCUCCGGGAUCCUGGGCACCAGGAGCCAC___________ .......((((..((((.(.((..............)).).)))).))))...................((((.(((..(((.((((....)))))))..)))))))............. (-29.22 = -29.26 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:58 2006