Locus 6458

Sequence ID 3L_DroMel_CAF1
Location 17,234,899 – 17,235,014
Length 115
Max. P 0.769990
window10386

overview

Window 6

Location 17,234,899 – 17,235,014
Length 115
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.47
Mean single sequence MFE -42.32
Consensus MFE -37.71
Energy contribution -37.52
Covariance contribution -0.19
Combinations/Pair 1.06
Mean z-score -1.65
Structure conservation index 0.89
SVM decision value 0.53
SVM RNA-class probability 0.769990
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17234899 115 + 23771897
UGUGGGAGAGUCCUUGUCUGCAAGCGAACCGAACAGGUUCGAGUUCGAGCUGAACAGAACAGA-----ACAGGAUGACAGGGCAAUUCGUCCUGGCAACGAUACUCGGGCCCAUCGCACA
.(((((.(((((((..((((....((((((.....)))))).((((.....))))....))))-----..))))((.((((((.....)))))).))......)))...)))))...... ( -40.60)
>DroSec_CAF1 118923 120 + 1
UGUGGGAGAGUCCUUGUCUGCAAGCGAACCGAACAGGUUCGAGUUCGAGCUAAACAGAACAGAACCGAACAGGAUGGCAGGGCACUUCGUCCUGGCAACGAUACUCGGGCCCAUCGCACA
.(((.(((..((((((....)))).))..).....((((((((((((.................((.....)).((.((((((.....)))))).)).))).)))))))))..)).))). ( -41.50)
>DroSim_CAF1 112747 120 + 1
UGUGGGAGAGUCCUUGUCUGCAAGCGAACCGAACAGGUUCGAGUUCGAGCUGAACAGAACAGAACCGAACAGGAUGGCAGGGCACUUCGUCCUGGCAACGAUACUCGGGCCCAUCGCACA
.(((((.(((((((..........((((((.....)))))).(((((..(((.......)))...)))))))))((.((((((.....)))))).))......)))...)))))...... ( -43.10)
>DroEre_CAF1 122287 120 + 1
UGUGGGAGAGUCCUGGUCUGCAAGCGAACCGAACAGGUUCGAGUUCGAGCUGAACAGCACAGCACAGAACAGGAUGACAGAGCAGCUCGUCCUGGCAACGAUACUCGGACCCAUCGCACA
.(((.((..((((............(((((.....)))))(((((((.((((.......))))......(((((((((......).))))))))....))).))))))))...)).))). ( -44.10)
>consensus
UGUGGGAGAGUCCUUGUCUGCAAGCGAACCGAACAGGUUCGAGUUCGAGCUGAACAGAACAGAACCGAACAGGAUGACAGGGCACUUCGUCCUGGCAACGAUACUCGGGCCCAUCGCACA
.(((.((..((((............(((((.....)))))(((((((..(((.......))).......((((((((.........))))))))....))).))))))))...)).))). (-37.71 = -37.52 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:39 2006