Locus 6456

Sequence ID 3L_DroMel_CAF1
Location 17,232,410 – 17,232,530
Length 120
Max. P 0.689949
window10383

overview

Window 3

Location 17,232,410 – 17,232,530
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 99.33
Mean single sequence MFE -28.80
Consensus MFE -28.18
Energy contribution -28.22
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.31
Structure conservation index 0.98
SVM decision value 0.33
SVM RNA-class probability 0.689949
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17232410 120 + 23771897
CCAAAACUAUGCGCAUCAUUUUAUUUGGGCACGUGCUGCUCGUCAUUUAAGAGUUUUGUCUGCACUUUCGUUGCUGGAAUUUUAAAAUAUUUUCCGUGCCAAAUGCCUGCGUGGCUUUUA
..((((((((((((((((.......))(((((((((.((((.........)))).......))))..........((((..(......)..)))))))))..))))..)))))).)))). ( -29.30)
>DroSec_CAF1 116401 120 + 1
CCAAAACUAUGCGCAUCAUUUUAUUUGGGCACGUGCUGCUCGUCAUUUAAGAGUUUUGUCUGCACUUUCGUUGCUGGAAUUUUAAAAUAUUUUCCGUGCCAAAUGCCUGCGUGGCUUUUA
..((((((((((((((((.......))(((((((((.((((.........)))).......))))..........((((..(......)..)))))))))..))))..)))))).)))). ( -29.30)
>DroSim_CAF1 110210 120 + 1
CCAAAACUAUGCGCAUCAUUUUAUUUGGGCACGUGCUGCUCGUCAUUUAAGAGUUUUGUCUGCACUUUCGUUGCUGGAAUUUUAAAAUAUUUUCCGUGCCAAAUGCCUGCGUGGCUUUUA
..((((((((((((((((.......))(((((((((.((((.........)))).......))))..........((((..(......)..)))))))))..))))..)))))).)))). ( -29.30)
>DroEre_CAF1 119805 120 + 1
CCAAAACUAUGCGCAUCAUUUUAUUUGGGCACGUGCUGCUCGUCAUUUAAGAGUUUUGUCUGCACUUUCGUUGCUUGAAUUUUAAAAUAUUUUCCGUGCCAAAUGCCUGCGUGGCUUUUA
..((((((((((((((((.......))(((((((((.((((.........)))).......)))).((((.....))))................)))))..))))..)))))).)))). ( -26.70)
>DroYak_CAF1 122675 120 + 1
CCAGAACUAUGCGCAUCAUUUUAUUUGGGCACGUGCUGCUCGUCAUUUAAGAGUUUUGUCUGCACUUUCGUUGCUGGAAUUUUAAAAUAUUUUCCGUGCCAAAUGCCUGCGUGGCUUUUA
..((((((((((((((((.......))(((((((((.((((.........)))).......))))..........((((..(......)..)))))))))..))))..)))))).)))). ( -29.40)
>consensus
CCAAAACUAUGCGCAUCAUUUUAUUUGGGCACGUGCUGCUCGUCAUUUAAGAGUUUUGUCUGCACUUUCGUUGCUGGAAUUUUAAAAUAUUUUCCGUGCCAAAUGCCUGCGUGGCUUUUA
..((((((((((((((((.......))(((((((((.((((.........)))).......))))..........((((..(......)..)))))))))..))))..)))))).)))). (-28.18 = -28.22 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:36 2006