Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,231,427 – 17,231,578 |
Length | 151 |
Max. P | 0.658256 |
Location | 17,231,427 – 17,231,538 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.27 |
Mean single sequence MFE | -18.19 |
Consensus MFE | -10.04 |
Energy contribution | -10.32 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.11 |
Mean z-score | -2.94 |
Structure conservation index | 0.55 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.571121 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17231427 111 - 23771897 AAUUUACGAGAAAUCACGCAAUAUUUAUGCAAUCUAAAAUGGCCAAA--ACAAAGGCUGGGUCAGAAAAAA-------AAAAAAAAUGAUAGUAUAAAUGCGAAAAAAAUUAAAAUAACA .......((....)).((((...(((((((..........((((...--.....))))..((((.......-------........)))).))))))))))).................. ( -17.96) >DroSec_CAF1 115454 111 - 1 AAUUUACGAGAAAUCACGCAAUAUUUAUGCAAUCUAAAAUGGCCAGA--ACAAAGGCUGGGUCA--AAUAAAAG----AAAAAACAUUAUAGUAUAAAUGCGAAA-AAAUUAAAAUAACA .......((....)).((((...(((((((..........((((...--.....))))...((.--.......)----)............)))))))))))...-.............. ( -16.10) >DroSim_CAF1 109248 113 - 1 AAUUUACGAGAAAUCACGCAAUAUUUAUGCAAUCUAAAAUGGCCAGA--ACAAAGGCUGGGUCAGAAAAAAAAG----AAAAAAAAUUAUAGUAUAAAUGCGAAA-AAAUUAAAAUAACA .......((....)).((((...(((((((..(((.(..(((((...--.....)))))..).)))........----((......))...)))))))))))...-.............. ( -16.10) >DroEre_CAF1 118756 106 - 1 AAUUUACGAGAAAUCACGCAAUAUUUAUGCAAUCUAAAAUGGCCAGA--GCAAAGGCUGGCUA---AAAGGCAG-------AAAAAAGGUGCCACAAAUGCA-AA-AAAUUAAAAUAACA .......((....))........(((.((((........(((((((.--.......)))))))---...((((.-------........)))).....))))-.)-))............ ( -21.00) >DroYak_CAF1 121583 116 - 1 AAUUUACGAGAAAUCACGCAAUAUUUAUGCAAUCUAAAAUGGCCAGAGUGCAAAGGCUGGGUCA--CAAAACAGAACCAAAAAAAAAGAUAGUAUGAAUGCA-AA-AAAUUAAAAUAACA .......((....))..(((...(((((((.((((.....((((..........))))((.((.--.......)).))........)))).)))))))))).-..-.............. ( -19.80) >consensus AAUUUACGAGAAAUCACGCAAUAUUUAUGCAAUCUAAAAUGGCCAGA__ACAAAGGCUGGGUCA__AAAAAAAG____AAAAAAAAUGAUAGUAUAAAUGCGAAA_AAAUUAAAAUAACA .......((....))..(((...(((((((..((......))((((..........))))...............................))))))))))................... (-10.04 = -10.32 + 0.28)
Location | 17,231,467 – 17,231,578 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.54 |
Mean single sequence MFE | -18.88 |
Consensus MFE | -15.84 |
Energy contribution | -16.24 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.84 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658256 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17231467 111 - 23771897 UUCGAUUUAAUUUAAGAAAUUUGCAUAAAAUAAACAUUGGAAUUUACGAGAAAUCACGCAAUAUUUAUGCAAUCUAAAAUGGCCAAA--ACAAAGGCUGGGUCAGAAAAAA-------AA ((((((((.((((.(((...(((((((((.........(.......)((....))........)))))))))))).))))((((...--.....))))))))).)))....-------.. ( -18.70) >DroSec_CAF1 115493 112 - 1 UUCGAUUUAAUUUAAGAAAUUUGCAUAAAAUAAACAUUGGAAUUUACGAGAAAUCACGCAAUAUUUAUGCAAUCUAAAAUGGCCAGA--ACAAAGGCUGGGUCA--AAUAAAAG----AA ...(((((.((((.(((...(((((((((.........(.......)((....))........)))))))))))).))))((((...--.....))))))))).--........----.. ( -18.50) >DroSim_CAF1 109287 114 - 1 UUCGAUUUAAUUUAAGAAAUUUGCAUAAAAUAAACAUUGGAAUUUACGAGAAAUCACGCAAUAUUUAUGCAAUCUAAAAUGGCCAGA--ACAAAGGCUGGGUCAGAAAAAAAAG----AA ((((((((.((((.(((...(((((((((.........(.......)((....))........)))))))))))).))))((((...--.....))))))))).))).......----.. ( -18.70) >DroEre_CAF1 118793 109 - 1 UUCGAUUUAAUUUAAGAAAUUUGCAUAAAAUAAACAUUGGAAUUUACGAGAAAUCACGCAAUAUUUAUGCAAUCUAAAAUGGCCAGA--GCAAAGGCUGGCUA---AAAGGCAG------ .....................(((............(((((......((....))..(((.......)))..)))))..(((((((.--.......)))))))---....))).------ ( -20.20) >DroYak_CAF1 121621 118 - 1 UUCGAUUUAAUUUAAGAAAUUUGCAUAAAAUAAACAUUGGAAUUUACGAGAAAUCACGCAAUAUUUAUGCAAUCUAAAAUGGCCAGAGUGCAAAGGCUGGGUCA--CAAAACAGAACCAA (((......((((.(((...(((((((((.........(.......)((....))........)))))))))))).))))((((..(((......))).)))).--.......))).... ( -18.30) >consensus UUCGAUUUAAUUUAAGAAAUUUGCAUAAAAUAAACAUUGGAAUUUACGAGAAAUCACGCAAUAUUUAUGCAAUCUAAAAUGGCCAGA__ACAAAGGCUGGGUCA__AAAAAAAG____AA ...(((((.((((.(((...(((((((((.........(.......)((....))........)))))))))))).))))((((..........)))))))))................. (-15.84 = -16.24 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:34 2006