| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,230,330 – 17,230,450 |
| Length | 120 |
| Max. P | 0.561679 |
| Location | 17,230,330 – 17,230,450 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.00 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -21.36 |
| Energy contribution | -21.36 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.561679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17230330 120 - 23771897 GGGGGUGGCGGUGAUUUAAAUGCAAAUUUAUCGCCGUGCAGCUGUAAAAAGGGAGCCAAAAAAUCAUAAACGACCGCCCACAAAAUAUAAAUAAAUGGACACACACGCAAAACGCAACCA ((((((((((((((..(((((....)))))))))))....(((.(......).))).................))))))...........................((.....))..)). ( -26.40) >DroSec_CAF1 114374 120 - 1 GGGGGUGGCGGUGAUUUAAAUGCAAAUUUAUCGCCGUGCAGCAGUAAAAAGGGAGCCAAAAAAUCAUAAACGACCCCCCACAAAAUAUAAAUAAAUGGACACACACGCAAAACGCUACCA ((((((((((((((..(((((....)))))))))).(((....)))........)))).....((......)).)))))...........................((.....))..... ( -25.10) >DroSim_CAF1 108160 120 - 1 GGGGGUGGCGGUGAUUUAAAUGCAAAUUUAUCGCCGUGCAGCAGUAAAAAGGGAGCCAAAAAAUCAUAAACGACCCCCCACAAAAUAUAAAUAAAUGGACACACACGCAAAACGCAACCA ((((((((((((((..(((((....)))))))))).(((....)))........)))).....((......)).)))))...........................((.....))..... ( -25.60) >DroEre_CAF1 117695 118 - 1 GGGGGUGGCGGUGAUUUAAAUGCAAAUUUAUCGCCGUGCAGCUGUAAAAAGGGAGCCAAAAAAUCAUAAACGACC--CCACAAAAUAUAAAUAAAUGGACACACACGCAAAACGCAACCA .(((((.(((((((..(((((....))))))))))))...(((.(......).)))................)))--))...........................((.....))..... ( -24.50) >DroYak_CAF1 120514 118 - 1 GGGGGUGGCGGUGAUUUAAAUGCAAAUUUAUCGCCGUGCAGCAGUAAAAAGGGAGCCAAAAAAUCAUAAACGACC--CCACAAAAUAUAAAUAAAUGGACACACACGCAAAACGCAACCA ((..((((((((((..(((((....))))))))))))...((........(((.....................)--))................((......)).))....)))..)). ( -23.80) >consensus GGGGGUGGCGGUGAUUUAAAUGCAAAUUUAUCGCCGUGCAGCAGUAAAAAGGGAGCCAAAAAAUCAUAAACGACC_CCCACAAAAUAUAAAUAAAUGGACACACACGCAAAACGCAACCA ((..((((((((((..(((((....))))))))))))...((........((..(...............)..))..(((...............)))........))....)))..)). (-21.36 = -21.36 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:19 2006