Locus 6449

Sequence ID 3L_DroMel_CAF1
Location 17,227,091 – 17,227,209
Length 118
Max. P 0.611684
window10359

overview

Window 9

Location 17,227,091 – 17,227,209
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.05
Mean single sequence MFE -36.66
Consensus MFE -32.90
Energy contribution -32.90
Covariance contribution -0.00
Combinations/Pair 1.06
Mean z-score -1.17
Structure conservation index 0.90
SVM decision value 0.16
SVM RNA-class probability 0.611684
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17227091 118 - 23771897
UUUGUUAUUAGCGGCGAACUGGGUCCUUGCCAGCAAGUUGGGCCUAGACUCGCCUCA--GAUGCCUAUCAGGAACAGGAGGCAUACGGAGAGAAAAUAGCAGCAGAAGAUGCCAUUAAUU
..(((((((..((((((.(((((((((((....)))...))))))))..)))))((.--.((((((.((.......))))))))...))..)..)))))))(((.....)))........ ( -38.10)
>DroSec_CAF1 110524 120 - 1
UUUGUUAUUAGCGGCGAACUGGGUCCUUGCCAGCAAGUUGGGCCUAGACUCGCCUCAGAGAUGCCUAUCAGGAACAGGAGGCAUACGGAGAGAAAAUAGCAGCAGAAGAAGCCAUUAAUU
.((((((((..((((((.(((((((((((....)))...))))))))..)))))((....((((((.((.......))))))))...))..)..)))))))).................. ( -36.00)
>DroSim_CAF1 104239 120 - 1
UUUGUUAUUAGCGGCGAACUGGGUCCUUGCCAGCAAGUUGGGCCUAGACUCGCCUCAGAGAUGCCUAUCAGGAACAGGAGGCAUACGGAGAGAAAAUAGCAGCAGAAGAAGCCAUUAAUU
.((((((((..((((((.(((((((((((....)))...))))))))..)))))((....((((((.((.......))))))))...))..)..)))))))).................. ( -36.00)
>DroEre_CAF1 114394 118 - 1
UGCGUUAUUAGCGGCGAACUGGGUCCUUGCCAGCAAGUUGGGCCUAGAUUCGCCUCA--GAUGCCUAUCGGGAACAGGAGGUGUACGGAGAGAAAAUCGCAGCAGAAGAAGCCAUUCAUU
((((...((..((((((((((((((((((....)))...)))))))).))))))((.--.((((((...(....)...))))))...)))..))...))))......(((....)))... ( -37.30)
>DroYak_CAF1 117210 118 - 1
GGCGUUAUUAGCGGCGAACUGGGUCCUUGCCAGCAAGUUGGGCCUAGAAUCGCCUCA--GAUGCCUAUCAGGAACAGGAGGUAUACGGAGAGAAAAUCGCAGCACAAGAAGGCAUUAAUU
.((.((....((.((((.(((((((((((....)))...))))))))..((..(((.--.((((((.((.......))))))))...))).))...)))).)).....)).))....... ( -35.90)
>consensus
UUUGUUAUUAGCGGCGAACUGGGUCCUUGCCAGCAAGUUGGGCCUAGACUCGCCUCA__GAUGCCUAUCAGGAACAGGAGGCAUACGGAGAGAAAAUAGCAGCAGAAGAAGCCAUUAAUU
...((((((..((((((.(((((((((((....)))...))))))))..)))))((....((((((.((.......))))))))...))..)..)))))).................... (-32.90 = -32.90 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:13 2006