Locus 644

Sequence ID 3L_DroMel_CAF1
Location 1,907,529 – 1,907,626
Length 97
Max. P 0.691582
window985

overview

Window 5

Location 1,907,529 – 1,907,626
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 95.26
Mean single sequence MFE -26.66
Consensus MFE -25.24
Energy contribution -25.52
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -1.14
Structure conservation index 0.95
SVM decision value 0.33
SVM RNA-class probability 0.691582
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1907529 97 + 23771897
CUUGAGAAUGAGCCAAGUCUCGGGGCACGAUAACGACUUUGGCAGAUUGUUUUCAAGGCUGACAAUCUGACACUUCAAAGUGGUUUUAAGCACAGAA
((((((((..((((((((((((.....)))....))).)))))...)..))))))))........((((.((((....))))((.....)).)))). ( -26.80)
>DroSec_CAF1 29802 97 + 1
CUUGAGAAUGAGCCAAGUCUCGGGGCAGGAUAACGACUUUGGCAGAUUGUUUUCAAGGCUGACAAUCUGACACUUCAAAGUGGUUUUAAGCACAGAA
(((((((.(......).)))))))((..((.(((.((((((((((((((((.........))))))))).....))))))).)))))..))...... ( -26.90)
>DroSim_CAF1 30039 97 + 1
CUUGAGAAUGAGCCAAGUCUCGGGGCAGGAUAACGACUUUGGCAGAUUGUUUUCAAGGCUGACAAUCUGACACUUCAAAGUGGUUUUAAGCACAGAA
(((((((.(......).)))))))((..((.(((.((((((((((((((((.........))))))))).....))))))).)))))..))...... ( -26.90)
>DroEre_CAF1 31530 97 + 1
CUUGAGAGUGAACCAAGUCUCGAGGCAGGAUAACGACUUUGGCAGAUUGUUUUCAAGGCUGACAAUCUGACACUUGAAAGUGGUCUUAGGCACAGCA
(((((((.(......).)))))))((....(((.(((.....(((((((((.........))))))))).((((....)))))))))).))...... ( -27.20)
>DroYak_CAF1 30710 97 + 1
CUUGAGGAUGAGCCAAGUCUCGGGGCAGGAUAAGGACUUUGGCAGAUUGUUUUCAAGGCUGACAAUCUGACACUUCAAAGUGGUUUUGGGCACAGAA
.((((((.((.(((((((((..(.......)..)))).)))))((((((((.........))))))))..)))))))).(((.(....).))).... ( -25.50)
>consensus
CUUGAGAAUGAGCCAAGUCUCGGGGCAGGAUAACGACUUUGGCAGAUUGUUUUCAAGGCUGACAAUCUGACACUUCAAAGUGGUUUUAAGCACAGAA
(((((((.(......).)))))))((.....(((.((((((((((((((((.........))))))))).....))))))).)))....))...... (-25.24 = -25.52 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:28 2006