Locus 6438

Sequence ID 3L_DroMel_CAF1
Location 17,222,525 – 17,222,643
Length 118
Max. P 0.653557
window10326

overview

Window 6

Location 17,222,525 – 17,222,643
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.02
Mean single sequence MFE -31.10
Consensus MFE -15.94
Energy contribution -16.62
Covariance contribution 0.68
Combinations/Pair 1.17
Mean z-score -1.78
Structure conservation index 0.51
SVM decision value 0.25
SVM RNA-class probability 0.653557
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17222525 118 - 23771897
ACUAUUUGUUGUGUUUGUGAAAUUCGUAUAACUGCAU-ACUCCUUGUAUCGUACUCCUAACA-UCUUUUCUCGCAGUGUAUGCGCACGCUUCUGGUUGGAGGGACGCAACAUAAUACAAU
..(((((((((((((((((.....(((((((((((((-((.....)))).((.......)).-.........))))).))))))))).((((.....)))))))))))))).)))).... ( -28.80)
>DroSec_CAF1 106081 104 - 1
ACUAUUUGUUGUGUAAGUGAAAUAUGUAUAACUACAU-ACUCCUU--------------ACA-UGUUUUCUCGCAGUGUAUGCGCACGCUUCUGGCUGGAGGGACGCAACAUAAUACAAU
..(((((((((((((((.((..((((((....)))))-).)))))--------------)).-...(..(((.((((....((....)).....)))))))..).)))))).)))).... ( -26.50)
>DroSim_CAF1 99821 104 - 1
ACUAUUUGUCGUGUUAGUGAAAUAUGCAUAAGUGCAU-ACUCCUU--------------AUA-UCUUUUCUCGCAGUGUAUGCGCACGCUUCUGGCUGGAGGGACGCAACAUAAUACAAU
.....((((.(((((.(((...((((((....)))))-)......--------------...-...(..(((.((((....((....)).....)))))))..)))))))))...)))). ( -23.80)
>DroEre_CAF1 109647 115 - 1
UGUAUUGGUUGUGUUCGUGAAAUCGCCAUCAUGAUGGAGCUCC-GGAUCUAUCAU----GCAGUGAUUUCUCGCAGUGUAUGCGCACGCCGCUGGCUGGAGGGACGCAACAUAAUACAAU
(((((((((((((((((.((((((((...(((((((((.....-...))))))))----)..)))))))).).(((((...((....))))))).......))))))))).))))))).. ( -46.00)
>DroYak_CAF1 112284 110 - 1
UCCAUUUAUUGUUUUUGGGAUAUCGUCAUCAUGAU----CUCCUGGACUUUUGCU----GCACU--UUUCUCGCAGUGUAUGCGUACGCCUCUGGCUGGAGGGACGCAACAUAAUACAAU
......((((((.((..(((.(((((....)))))----.)))..)).....(((----((...--......)))))((.(((((.(.(((((....))))))))))))))))))).... ( -30.40)
>consensus
ACUAUUUGUUGUGUUAGUGAAAUAGGCAUAACUACAU_ACUCCUUG_____U__U____ACA_UCUUUUCUCGCAGUGUAUGCGCACGCUUCUGGCUGGAGGGACGCAACAUAAUACAAU
.......((((((((((((.......)))..........((((............................((((.....))))...(((...))).))))))))))))).......... (-15.94 = -16.62 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:42 2006