Locus 6433

Sequence ID 3L_DroMel_CAF1
Location 17,218,777 – 17,218,897
Length 120
Max. P 0.938659
window10317

overview

Window 7

Location 17,218,777 – 17,218,897
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.00
Mean single sequence MFE -38.98
Consensus MFE -32.32
Energy contribution -32.48
Covariance contribution 0.16
Combinations/Pair 1.24
Mean z-score -1.85
Structure conservation index 0.83
SVM decision value 1.27
SVM RNA-class probability 0.938659
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17218777 120 - 23771897
CUGCAUCCAGCUGGCUAUACUGCUCUUGAUCUUCGCGAUCAACGCCAUUUUCGUAUUCAUCAUCCUGAGCGUCUAUCUGCGCCCAGCCCUCGACAAUGGCAGUGAGAUGUCCUUGCUGGA
.....((((((.((.(((..((((.((((((.....)))))).((((((.(((...........(((.((((......)))).)))....))).))))))))))..))).))..)))))) ( -36.46)
>DroSec_CAF1 102119 120 - 1
CUGCAUCCAGCUGGCCAUACUGCUGUUGAUCUUCGCAAUCAACGCCAUUUUCGUAUUCAUCAUCCUGAGCGUAUAUAUGCGCCCAGCCCUCGACACUGGCAGUGAUAUGUCCUUGCUGGA
.....((((((.((.((((..(((((((((.......))))))((((.(.(((...........(((.(((((....))))).)))....))).).)))))))..)))).))..)))))) ( -38.36)
>DroSim_CAF1 95332 120 - 1
CUGCAUCCAGCUGGCCAUACUGCUGUUGAUCUUCGCGAUCAACGCCAUUUUCGUAUUCAUCAUCCUGAGCGUGUAUAUGCGCCCAGCCCUCGACAAUGGCAGUGAUAUGUCCUUGGUGGA
.....((((.(.((.((((..((((((((((.....)))))))((((((.(((...........(((.((((......)))).)))....))).)))))))))..)))).))..).)))) ( -41.06)
>DroEre_CAF1 105474 120 - 1
CUGCUUCCAGAUGGCCAUACUGCUGUUGAUCUUCGCGAUUAACGCCGUUUUUGUGUUCAUUAUCCUGAGCGUCUAUCUGCGCCCGGUGCUCGACAAUGGCGGGGAGAUGUCCUUGCUGGA
.....(((((..((.(((.((.(((((((((.....)))))))((((((.....(((((......)))))(((.....((((...))))..))))))))).)).))))).))...))))) ( -38.50)
>DroYak_CAF1 108042 120 - 1
CUGCUUUCAGCUGGCCAUACUGGUGUUGAUCUUCGCGAUCAACACCGUGUUUGUGUUCAUCAUCCUGAGUGUCUAUCUGCGCCCGGCCCUCGACAAUGGCAGCGAGAUGUCCUUGCUGGA
..((.....)).((((.....((((((((((.....))))))))))((((..(((..(((........)))..)))..))))..))))...........(((((((.....))))))).. ( -40.50)
>consensus
CUGCAUCCAGCUGGCCAUACUGCUGUUGAUCUUCGCGAUCAACGCCAUUUUCGUAUUCAUCAUCCUGAGCGUCUAUCUGCGCCCAGCCCUCGACAAUGGCAGUGAGAUGUCCUUGCUGGA
.....((((((.((.(((..(((((((((((.....)))))))((((((.(((...........(((.((((......)))).)))....))).))))))))))..))).))..)))))) (-32.32 = -32.48 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:33 2006