Locus 6432

Sequence ID 3L_DroMel_CAF1
Location 17,218,217 – 17,218,337
Length 120
Max. P 0.982695
window10316

overview

Window 6

Location 17,218,217 – 17,218,337
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -40.18
Consensus MFE -36.88
Energy contribution -36.48
Covariance contribution -0.40
Combinations/Pair 1.06
Mean z-score -1.73
Structure conservation index 0.92
SVM decision value 1.92
SVM RNA-class probability 0.982695
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17218217 120 + 23771897
GGUUGGGGACGGCUGACAGUCUCCGACUGGCCUGUUAUUGUUGGCCCGGCGCACAAUGCGGCCAUAAAAAGCUGCCAAGCCAAACAAUUGAAACAAUAAAACGGCUUUAAGAAGGGGCCC
((((((((((........))))))))))(((((.((.(((..((((.(((.......(((((........)))))...))).....((((...)))).....)))).))).)).))))). ( -42.20)
>DroSec_CAF1 101559 120 + 1
GGUUGGGGACGGCUGACAGUCUCCGACUGGCCUGUUAUUGUUGGCCCGGCGCACAAUGCGGCCAUAAAAAGCUGGCAAGCCAAACAAUUGAAACAAUAAAACGGCUUUAAGAUGGGGUCC
((((((((((........))))))))))(((((..((((...((((.(((((.....)).((((........))))..))).....((((...)))).....))))....))))))))). ( -39.80)
>DroSim_CAF1 94772 120 + 1
GGUUGGGGACGGCUGACAGUCUCCGACUGGCCUGUUAUUGUUGGCCCGGCGCACAAUGCGGCCAUAAAAAGCUGGCAAGCCAAACAAUUGAAACAAUAAAACGGCUUUAAGAUGGGGCCC
((((((((((........))))))))))(((((..((((...((((.(((((.....)).((((........))))..))).....((((...)))).....))))....))))))))). ( -42.50)
>DroEre_CAF1 104919 120 + 1
GGUUGGGGACGGCUGACAGUCUCCGACUGGCCUGUUAUUGUUGGCUCGGAGCACAAUGCGGCCAUAAAAAGCUGGCAAGCCAAACAAUUGAAACAAUAAAACGGCUUUAAGAAGGGGCUC
((((((((((........))))))))))(((((.((.((((..(((.((.((.....))..))......)))..))))(((.....((((...)))).....)))......)).))))). ( -38.80)
>DroYak_CAF1 107487 120 + 1
GGUUGGGGACGGCUGACAGUCUCCGACUGGCCUGUUAUUGUUGGCUCAGAGCACAAUGCGGCCAUAAAAAGCUGGCAAGCCAAACAAUUGAAACAAUAAAACGGCUUUAAGAAGGAGUCC
((((((((((........))))))))))((((..((((((((((((....((.....)).((((........)))).))))...(....).))))))))...)))).............. ( -37.60)
>consensus
GGUUGGGGACGGCUGACAGUCUCCGACUGGCCUGUUAUUGUUGGCCCGGCGCACAAUGCGGCCAUAAAAAGCUGGCAAGCCAAACAAUUGAAACAAUAAAACGGCUUUAAGAAGGGGCCC
((((((((((........))))))))))((((..((((((((((((((........)).)))).......(((....)))...........))))))))...)))).............. (-36.88 = -36.48 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:32 2006