Locus 6430

Sequence ID 3L_DroMel_CAF1
Location 17,216,727 – 17,216,847
Length 120
Max. P 0.933322
window10310

overview

Window 0

Location 17,216,727 – 17,216,847
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.83
Mean single sequence MFE -37.96
Consensus MFE -36.96
Energy contribution -37.00
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.53
Structure conservation index 0.97
SVM decision value 1.23
SVM RNA-class probability 0.933322
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17216727 120 - 23771897
AUUAUGGUCUGAUUGCAUAUUUGCGGAUAUGCGCGCCAUAAACACGUUCAGACGUGCUGCAACCGCAACAACGGCGAAUGGUGGAAAACACGGCAGCGCAACAGCCGAAAGCCAACGCGA
....(((.(((.(((((....)))))...((((((((.......(((((...(((..(((....)))...)))..)))))(((.....)))))).))))).))))))...((....)).. ( -37.70)
>DroSec_CAF1 100277 120 - 1
AUUAUGGUCUGAUUGCAUAUUUGCGGAUAUGCGCGCCAUAAACACGUUCAGACGUGCUGCAACCGCAACAACGGCGAAUGGUGGAAAACACGGCAGCGCAACAGCCGAAAGCCAACGCGA
....(((.(((.(((((....)))))...((((((((.......(((((...(((..(((....)))...)))..)))))(((.....)))))).))))).))))))...((....)).. ( -37.70)
>DroSim_CAF1 93511 120 - 1
AUUAUGGUCUGAUUGCAUAUUUGCGGAUAUGCGCGCCAUAAACACGUUCAGACGUGCUGCAACCGCAACAACGGCGAAUGGUGGAAAACACGGCAGCGCAACAGCCGAAAGCCAACGCGA
....(((.(((.(((((....)))))...((((((((.......(((((...(((..(((....)))...)))..)))))(((.....)))))).))))).))))))...((....)).. ( -37.70)
>DroEre_CAF1 103587 120 - 1
AUUAUGGUCUGAUUGCAUAUUUGCGGAUAUGCGCGCCAUAAACACGUUCAGACGUGCUGCAACCGCAACAUCGGCGAACGGUGGAAAACACGGCAGCGCAACAGCCGAAAGCCAACGCGA
....(((.(((.(((((....)))))...((((((((.......(((((...((((.(((....))).)).))..)))))(((.....)))))).))))).))))))...((....)).. ( -39.30)
>DroYak_CAF1 106001 120 - 1
AUUAUGGUCUGAUUGCAUAUUUGCGGAUAUGCGCGCCAUAAACACGUUCAGACGUGCUGCAACCGCAACAUCGGCGAAUGGCGGAAAACACGGCAGCGCAACAGCCGAAAGCCAACGCGA
....(((.(((.(((((....)))))...((((((((.....(((((....)))))((((...(((.......)))....)))).......))).))))).))))))...((....)).. ( -37.40)
>consensus
AUUAUGGUCUGAUUGCAUAUUUGCGGAUAUGCGCGCCAUAAACACGUUCAGACGUGCUGCAACCGCAACAACGGCGAAUGGUGGAAAACACGGCAGCGCAACAGCCGAAAGCCAACGCGA
....(((.(((.(((((....)))))...((((((((.......(((((...((((.(((....))).)).))..)))))(((.....)))))).))))).))))))...((....)).. (-36.96 = -37.00 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:26 2006