Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,905,860 – 1,905,955 |
Length | 95 |
Max. P | 0.969900 |
Location | 1,905,860 – 1,905,955 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 74.31 |
Mean single sequence MFE | -33.03 |
Consensus MFE | -18.68 |
Energy contribution | -18.18 |
Covariance contribution | -0.49 |
Combinations/Pair | 1.48 |
Mean z-score | -2.13 |
Structure conservation index | 0.57 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.969900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1905860 95 - 23771897 CAGGGGCUU---GGCUCAAUAAUUUAAACAUGAUUAGGCCUGGCUGUGUUUUUACAGCC-UGCAGGAUCAGCGGUGAAACGCCCCGAGGACUUA----------GGCCA ....(((((---(((((.............(((((..((..(((((((....)))))))-.))..)))))(((......)))...)))...)))----------)))). ( -33.80) >DroVir_CAF1 33159 83 - 1 CCGAGGCUC--AGAUACAAUAAUUUAAACAUGAUUAGGUCUGGUUGUGUUUUUACAGCCGUGCAAGG-----------CCGCCUCAAGGGCUUA----------AG--- ..(((((..--........(((((.......)))))((((((((((((....))))))).....)))-----------))))))).........----------..--- ( -24.20) >DroPse_CAF1 31574 94 - 1 CGGGGGUUU-CAGGCCCAAUAAUUUAAACAUGAUUAGGUCUGGUUGUGUUUUUACAGCC-UGCCAGCUCAUCGGAGCACCGCCCUGAGGGCUUA----------G---A .((((((..-...))))...................(((..(((((((....)))))))-.))).((((....)))).))((((...))))...----------.---. ( -32.10) >DroWil_CAF1 43005 98 - 1 CUUGGGCUCUGAGCCUCAAUAAUUUAAACAUGAUUAGGUCUGGUUGUGUUUUUACAGCC-UGCCUGAAAACCAG------GGCUCGAGGGCUUAUAU----CGGGACCA (((((((((((....(((............)))((((((..(((((((....)))))))-.))))))....)))------))))))))(((((....----.))).)). ( -33.80) >DroYak_CAF1 29041 95 - 1 CAGGGGCUU---GGCUCAAUAAUUUAAACAUGAUUAGGUCUGGUUGUGUUUUUACAGCC-UGCAGGAUCAGCGGCGAAACGCCCCGAGGACUUA----------GGCCA ....(((((---(((((.............(((((..((..(((((((....)))))))-.))..)))))(.((((...)))).))))...)))----------)))). ( -30.70) >DroAna_CAF1 33184 106 - 1 CUAGGGCUC--GGGCUCAAUAAUUUAAACAUGAUUAGGUCUGGUUGUGUUUUCACAGCC-UGCCAGCUCAGCGGAGCAACGCCCCGAGGGCUUAUGGUGUCCUAGCCCA ...(((((.--((((.(.((((..............(((..(((((((....)))))))-.))).((((....))))...((((...)))))))).).)))).))))). ( -43.60) >consensus CAGGGGCUC__AGGCUCAAUAAUUUAAACAUGAUUAGGUCUGGUUGUGUUUUUACAGCC_UGCAAGAUCAGCGG_G_AACGCCCCGAGGGCUUA__________GGCCA ..(((((.....((((...(((((.......))))))))).(((((((....))))))).....................)))))........................ (-18.68 = -18.18 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:27 2006