| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,215,824 – 17,215,930 |
| Length | 106 |
| Max. P | 0.919686 |
| Location | 17,215,824 – 17,215,930 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 93.08 |
| Mean single sequence MFE | -31.40 |
| Consensus MFE | -31.40 |
| Energy contribution | -31.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.919686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17215824 106 + 23771897 CAAAGCCGCUGGCAGCAUUUAGCUGCAAUAGACAGCCAUUUUGCGGUGCUGCCUCGGCGAUAAAGUAAUAGCUGCUAUUUGGGCUUAUGACACACACA-CACACACA ..(((((....(((((.....)))))(((((.((((....((((..((.(((....))).))..))))..)))))))))..)))))............-........ ( -31.40) >DroSec_CAF1 99404 102 + 1 CAAAGCCGCUGGCAGCAUUUAGCUGCAAUAGACAGCCAUUUUGCGGUGCUGCCUCGGCGAUAAAGUAAUAGCUGCUAUUUGGGCUUAUGACACACA-----CACACA ..(((((....(((((.....)))))(((((.((((....((((..((.(((....))).))..))))..)))))))))..)))))..........-----...... ( -31.40) >DroEre_CAF1 102749 100 + 1 CAAAGCCGCUGGCAGCAUUUAGCUGCAAUAGACAGCCAUUUUGCGGUGCUGCCUCGGCGAUAAAGUAAUAGCUGCUAUUUGGGCUUACGAC-------ACACACACA ..(((((....(((((.....)))))(((((.((((....((((..((.(((....))).))..))))..)))))))))..))))).....-------......... ( -31.40) >consensus CAAAGCCGCUGGCAGCAUUUAGCUGCAAUAGACAGCCAUUUUGCGGUGCUGCCUCGGCGAUAAAGUAAUAGCUGCUAUUUGGGCUUAUGACACACA___CACACACA ..(((((....(((((.....)))))(((((.((((....((((..((.(((....))).))..))))..)))))))))..)))))..................... (-31.40 = -31.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:25 2006