Locus 6422

Sequence ID 3L_DroMel_CAF1
Location 17,207,669 – 17,207,785
Length 116
Max. P 0.965956
window10283

overview

Window 3

Location 17,207,669 – 17,207,785
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.20
Mean single sequence MFE -25.02
Consensus MFE -11.86
Energy contribution -11.94
Covariance contribution 0.08
Combinations/Pair 1.22
Mean z-score -2.46
Structure conservation index 0.47
SVM decision value 1.59
SVM RNA-class probability 0.965956
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17207669 116 - 23771897
CUAAACCAAGGUUCGCGUCUGCACUAAACGUU----CCUUACGUUUUUACAUACCAAAAUGACUUAUCCAUAAAGUGCUAUAAUAUUCAUUAAAAAAAACGUGACCGUUGGUAUUUAAAA
....((((((((.(((((..(((((((((((.----....))))))...(((......)))............)))))..((((....))))......)))))))).)))))........ ( -24.20)
>DroSec_CAF1 92166 110 - 1
CCAAACCAAGGUUCGCGUCUUCACUGAACGUUACAUCUUUACGGUUUU-------AAAAUGACUUAUCCAUAAAGUGCUAUAAAAUUCAC--AAA-AAACGUGACCGUUGGUAUUUUAAA
....((((((((.(((((......((((..(((((.(((((.((...(-------((......))).)).)))))))...)))..)))).--...-..)))))))).)))))........ ( -21.60)
>DroSim_CAF1 84450 111 - 1
CCACACCAAGGUUCGCGUCUUCACUGAACGUUACAUCUUUAUGGUUUU-------AAAAUGACUUAUCCAUAAAGUGCUAUAAUAUGCAC--AAAAAAACGUGACCGUUGGUAUUUUAAA
....((((((((.(((((...................(((((((...(-------((......))).)))))))((((........))))--......)))))))).)))))........ ( -26.50)
>DroEre_CAF1 94819 107 - 1
CCCAAUCGAGGUUCACGUCUGCACUGAACGUUUCGGUCUUAAAAUACC-------AAAGCGCCUUAUCCAUAAGGUGCUAUA---UUUAU--AC-GCAACGUGACCGUUGGUAUUUUAAA
.(((((...(((.(((((.((((((((.....)))))...........-------..(((((((((....)))))))))...---.....--..-))))))))))))))))......... ( -32.80)
>DroYak_CAF1 97641 106 - 1
CCAAACAAAGGUUCAGGUCUGCACUAAACGUUUCAGUCUUAAGAUACC-------AAAACGACUUAUCCGUAAAGUGCUAUA---UUUAC--AA-GCAACGUGACCGUUGGUAUUUUAA-
((((.....(((.((.((.(((......(((((..(((....)))...-------.)))))........(((((........---)))))--..-))))).))))).))))........- ( -20.00)
>consensus
CCAAACCAAGGUUCGCGUCUGCACUGAACGUUACAGCCUUAAGAUUUU_______AAAAUGACUUAUCCAUAAAGUGCUAUAA_AUUCAC__AAAAAAACGUGACCGUUGGUAUUUUAAA
....((((((((.(((((..(((((................................................)))))....................)))))))).)))))........ (-11.86 = -11.94 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:01 2006