Locus 6421

Sequence ID 3L_DroMel_CAF1
Location 17,207,068 – 17,207,188
Length 120
Max. P 0.748221
window10282

overview

Window 2

Location 17,207,068 – 17,207,188
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.83
Mean single sequence MFE -46.34
Consensus MFE -42.46
Energy contribution -42.74
Covariance contribution 0.28
Combinations/Pair 1.06
Mean z-score -1.36
Structure conservation index 0.92
SVM decision value 0.47
SVM RNA-class probability 0.748221
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17207068 120 - 23771897
CGCAAUCCGGGCGACCGAUCGUUGGGUAACCUAGCGCGAGAACCGAAAAACCGCCGUAGUCAUGGCGUUCCGGCUGCUUGGCACGGCCAAAACGAUGGCCGGAAUGAUGCGGCGCAACUA
(((....(((....)))...((((((...))))))))).............(((((((.......(((((((((((((((((...)))))...).))))))))))).)))))))...... ( -46.70)
>DroSec_CAF1 91547 120 - 1
CGCAAUCCGGGCGACCGAUCGUUGGGUAACCUAGCGCGAGAACCGAAAAACCGCCGUAGUCAUGGCGUUCCGGCUGUUUGGCACGGCCAAAACGAUGGUCGGAAUGAUGCGGCGCAACUA
(((....(((....)))...((((((...))))))))).............(((((((.......(((((((((((((((((...))))....))))))))))))).)))))))...... ( -46.20)
>DroSim_CAF1 83832 120 - 1
CGCAAUCCGGGCGACCGAUCGUUGGGUAACCUAGCGCGAGAACCGAAAAACCGCCGUAGUCAUGGCGUUCCGGCUGUUUGGCACGGCCAAAACGAUGGCCGGAAUGAUGCGGCGCAACUA
(((....(((....)))...((((((...))))))))).............(((((((.......(((((((((((((((((...))))....))))))))))))).)))))))...... ( -48.90)
>DroEre_CAF1 94178 120 - 1
CGCAAUCCGGGCGACCGAUCGUUGGGUAACCUAGCGCGAGAACCGAAAAACCGCCGUAGUCAUGGCGUUCCGGCUGCUUGGCACGGCUAAAACGAUGGCCGGAAUGAUGCGGCGCAACUA
(((....(((....)))...((((((...))))))))).............(((((((.......(((((((((((((((((...)))))...).))))))))))).)))))))...... ( -44.40)
>DroYak_CAF1 97010 118 - 1
CGCAAUCCGGGCGACCGAUCGUUGGGUAACCUAGC--GAGAACCGAAAAACCGCCGUAGUCAUGGCUUUCCGGCUGCUUGGCACGGCCAAAACGAUGGCCGGAAUGAUGCGGCGCAACUA
.((....(((....))).((((((((...))))))--)).............((((((((((.((((....))))...)))).((((((......))))))......))))))))..... ( -45.50)
>consensus
CGCAAUCCGGGCGACCGAUCGUUGGGUAACCUAGCGCGAGAACCGAAAAACCGCCGUAGUCAUGGCGUUCCGGCUGCUUGGCACGGCCAAAACGAUGGCCGGAAUGAUGCGGCGCAACUA
(((....(((....)))...((((((...))))))))).............(((((((.......(((((((((((.(((((...))))).....))))))))))).)))))))...... (-42.46 = -42.74 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:00 2006