Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,897,115 – 1,897,222 |
Length | 107 |
Max. P | 0.671902 |
Location | 1,897,115 – 1,897,222 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 76.66 |
Mean single sequence MFE | -26.10 |
Consensus MFE | -8.66 |
Energy contribution | -9.50 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.29 |
Mean z-score | -1.88 |
Structure conservation index | 0.33 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1897115 107 - 23771897 UCUGAUUAUGUGUCGGGCCUUGCUAUGUUAAGCAGAGAAACU------AGUUUCUGUUGGCUACCUGUAGAUACUGUUAAGUAAAUGUUAUUUGGCUUAACAUAAGUUUAAGC- .(((((.....)))))((...((((((((((((........(------(((.((((..((...))..)))).)))).((((((.....))))))))))))))).)))....))- ( -24.70) >DroSec_CAF1 19556 106 - 1 UCUGAUUAUGUGGCGAGCAGUGCUAUGUUAUGCCGAGAAACU------AGCUUCUGUUGGCUACCUGUAGAUACUGUU-ACUAAAUGUUAUUUGGUUUAACAUAAGUUUCAGC- ((((.....(((((.(((((.((((.(((.........))))------)))..))))).)))))...))))..(((..-(((..((((((.......)))))).)))..))).- ( -28.80) >DroSim_CAF1 19817 107 - 1 UCUGAUUAUGUGGCGAGCAGUGCUAUGUUAUGCCGAGAAACU------AGUUUCUGUUGGCUACCUGUAGAUACUGUUAACUAAAUGUUAUUUGGUUUAACAUAAGUUUAAGC- .....((((((....(((((((((((.....(((((((((..------..)))))..)))).....)))).)))))))((((((((...))))))))..))))))........- ( -25.40) >DroEre_CAF1 20816 112 - 1 UCUGAUUAUGUGGCGAGCAGUGCUAUGU-UAGCAGCAACAAUAAUUGCAGUUUCUGCUGGAAACUUGUAGAUACUGUCAAAUAAAUGUUAUUUGGCUUAACAUAAGAUUAAAU- ..(((((.((((..((((..(((((...-)))))............(((((.(((((.(....)..))))).)))))((((((.....))))))))))..)))).)))))...- ( -30.70) >DroYak_CAF1 20189 91 - 1 UCUGAUUAUGU----------------U-AAGCAGAGAAACU------AGUUUCUGUUGGAAAGUUGUAGAUACAUUCAAGAAAGAUGUAUUUGGUCUAACAUAGGUUGAAAUA ((...((((((----------------(-(((((((((....------..)))))))).........((((((((((.......))))))))))...))))))))...)).... ( -20.90) >consensus UCUGAUUAUGUGGCGAGCAGUGCUAUGUUAAGCAGAGAAACU______AGUUUCUGUUGGCUACCUGUAGAUACUGUUAACUAAAUGUUAUUUGGUUUAACAUAAGUUUAAGC_ .....((((((...((((............((((((((............)))))))).........((((((.((((.....)))).)))))))))).))))))......... ( -8.66 = -9.50 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:26 2006