| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,205,430 – 17,205,550 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 17,205,430 – 17,205,550 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.50 |
| Mean single sequence MFE | -44.08 |
| Consensus MFE | -30.35 |
| Energy contribution | -30.41 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17205430 120 - 23771897 GCAAACGUGGUGGCAAGACCUUCGGUGGCCACUCGGAGCAAGAGAAUACCCUUAACCAGCUUCUGGUGGAAAUGGAUGGCUUCAAUACCACUACGAAUGUGGUCGUACUGGCCGCCACUA ......(((((((((((.((.((.((..(((((.(((((..(((......))).....))))).)))))..)).)).)))))((.(((.(((((....))))).))).)))))))))).. ( -45.80) >DroVir_CAF1 110890 120 - 1 GGAAACGUGGCGGCAAAACGUUUGGCGGCCAUUCCGAGCAGGAGAAUACACUGAAUCAGCUGCUGGUCGAAAUGGAUGGCUUUAAUACGACCACGAACGUGGUGGUGCUGGCUGCCACCA (....)((((((((.........(((.((((((.(((.(((.((...............)).))).))).))))).).)))....(((.(((((....))))).)))...)))))))).. ( -47.06) >DroGri_CAF1 75914 120 - 1 GAAAGCGUGGCGGCAAAACCUUUGGCGGCCAUUCGGAGCAGGAGAAUACACUGAAUCAGCUGCUCGUUGAGAUGGAUGGCUUCAAUACCACUACAAAUGUGGUGGUGCUGGCCGCCACCA ....(.((((((((.......((((.(((((((((((((((..((..........))..)))))).......)))))))))))))(((((((((....)))))))))...))))))))). ( -51.11) >DroWil_CAF1 115518 120 - 1 GAAAGCGUGGAGGCAAAACAUUUGGCGGCCAUUCCGAGCAGGAGAACACCUUGAAUCAGUUGCUGGUGGAAAUGGAUGGCUUUAAUACCACCACCAAUGUGGUUGUAUUGGCAGCCACCA ....((.(((((((....(....)...)))..)))).)).......((((..............))))....(((.((((((((((((.(((((....))))).))))))).)))))))) ( -37.84) >DroMoj_CAF1 110475 120 - 1 GCAAGCGAGGUGGCAAAACCUUUGGCGGGCAUUCGGAGCAGGAGAACACACUGAAUCAGCUGCUGGUCGAAAUGGAUGGCUUCAAUACGACCACCAAUGUGGUGGUGCUGGCGGCCACCA ........((((((....((((((((.((((...((..(((.........)))..))...)))).))))))..))...(((....(((.(((((....))))).)))..))).)))))). ( -42.10) >DroAna_CAF1 71907 120 - 1 GCAAACGAGGCGGCAAAACCUUCGGUGGUCAUUCCGAGCAGGAGAACACACUUAACCAGCUGCUAGUCGAAAUGGACGGUUUCAACACCACAACGAACGUGGUGGUGCUGGCCGCUACGA .....((.((((((.(((((.((((........))))((((..................))))..(((......))))))))((.((((((.((....)).)))))).)))))))).)). ( -40.57) >consensus GCAAACGUGGCGGCAAAACCUUUGGCGGCCAUUCCGAGCAGGAGAACACACUGAAUCAGCUGCUGGUCGAAAUGGAUGGCUUCAAUACCACCACGAAUGUGGUGGUGCUGGCCGCCACCA ......((((((((.........(((.((((((..((.(((.((...............)).))).))..))))).).))).((.(((.(((((....))))).))).)))))))))).. (-30.35 = -30.41 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:57 2006