Locus 6415

Sequence ID 3L_DroMel_CAF1
Location 17,188,051 – 17,188,147
Length 96
Max. P 0.998176
window10273

overview

Window 3

Location 17,188,051 – 17,188,147
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 97.71
Mean single sequence MFE -27.76
Consensus MFE -26.92
Energy contribution -26.60
Covariance contribution -0.32
Combinations/Pair 1.09
Mean z-score -2.02
Structure conservation index 0.97
SVM decision value 3.03
SVM RNA-class probability 0.998176
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17188051 96 + 23771897
UUUUCCCCAGGGAAAGCGUGUGGAAAACAAAAGGCAAAGGCUGCGCCCGAAACGAAAGUAGGCGGUGGAAACACAGUGGCGGUAGGAAAAGCACCG
.(((((....)))))((.(((.....)))....))....((..((((....((....)).))).(((....))).)..))(((.(......)))). ( -28.70)
>DroSec_CAF1 72537 96 + 1
UUUUCCCCAGGGAAAGCGUGUGGAAAACAAAAGGCAAAGGCUGUGCCCGAAACGAAAGUAGGCGGUGGAAACACAGUGGCAGUAGGAAAAGCACCG
.(((((....)))))(.((((...........(((....))).((((((..((....))...))(((....)))...)))).........))))). ( -26.40)
>DroSim_CAF1 64852 96 + 1
UUUUCCCCAGGGAAAGCGUGUGGAAAACAAAAGGCAAAGGCUGUGCCCGAAACGAAAGUAGGCGGUGGAAACACAGUGGCAGUAGGAAAAGCACCG
.(((((....)))))(.((((...........(((....))).((((((..((....))...))(((....)))...)))).........))))). ( -26.40)
>DroEre_CAF1 74491 96 + 1
UUUUCCCCAGGGAAAGCGUGUGGAAAACAAAAGGCAAAGGCUGUGCCCGAAACGAAAGUAGGCGGUGGAAACACAGUGGCAGUAGCAAAAGCACCG
((((((.((.(.....).)).))))))......((....((((((((((..((....))...))(((....)))...)))).))))....)).... ( -29.50)
>DroYak_CAF1 76008 96 + 1
UUUUCCCCAGGGAAAGCGUGUGGAAAACAAAAGGCAAAGGCUGUGCCCGAAACGAAAGUAGGCGGUGGAAACACAGUAGCAGUAGCAGAAGCACCG
.(((((....)))))((.(((.....)))....((....((((((((....((....)).))).(((....)))....))))).))....)).... ( -27.80)
>consensus
UUUUCCCCAGGGAAAGCGUGUGGAAAACAAAAGGCAAAGGCUGUGCCCGAAACGAAAGUAGGCGGUGGAAACACAGUGGCAGUAGGAAAAGCACCG
.(((((....)))))((.(((.....)))..........((((((((....((....)).))).(((....)))....))))).......)).... (-26.92 = -26.60 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:51 2006