| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,185,070 – 17,185,165 |
| Length | 95 |
| Max. P | 0.745130 |
| Location | 17,185,070 – 17,185,165 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 69.41 |
| Mean single sequence MFE | -26.44 |
| Consensus MFE | -3.90 |
| Energy contribution | -5.82 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.15 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17185070 95 + 23771897 AGUG-GUGGCCAAGAGUUUGAGGGGAAGUCG-----CAAGAAAGGGCCCGGAAAGAAAUAGACUCGCAGAGGA-----GC-AUCUCUAAGCUCGGACUUGGACAAAA ....-.((.(((..(((((((((((...((.-----...)).....))).........((((...((......-----))-...))))..))))))))))).))... ( -24.40) >DroSec_CAF1 69667 90 + 1 AGU----GGCCAAGAGUUCG--GGGGAGUGG-----CAAGAAAGGGCCCGGAAAGAAAUAGACUCGCAGAGGA-----GC-AUCUCUGAGCUCGGACUUGGACAAAA ..(----(.(((((((((((--(((((((((-----(........)))(.....)......))))((......-----))-..))))))))))....)))).))... ( -25.50) >DroSim_CAF1 61967 94 + 1 AGUGGGUGGCCAAGAGUUCG--GGGCAGUGG-----CAAGAAAGGGCCCGGAAAGAAAUAGACUCGCAGAGGA-----GC-AUCUCUGAGCUCGGACUUGGACAAAA ......((.(((((..(((.--((((..(..-----......)..)))).))).......((((((.(((...-----..-.))).)))).))...))))).))... ( -25.40) >DroYak_CAF1 73019 83 + 1 AGUG-GUGGCCAAGAGUUUG--GGGGAGUGAGCGAGUGAGUAAGAGCCAGGAAAGGAAUAGACUCGCAGA--------GC-UUCUCUGAGCUCGG------------ ..((-(...))).(((((..--(((((((...(..((((((.....((......)).....)))))).).--------))-)))))..)))))..------------ ( -31.00) >DroAna_CAF1 51523 95 + 1 AGUA-GUGGCCCGGAGAAGC--AGAAAGGAG-----CAAAAAAGGACGAUGAGAUGAGUCGGGC--CAAAGGAAUGAAACAUUCCCUAAGCUCGGACUUGGCCAA-- ....-.(((((.((.....(--.....)(((-----(......((.((((.......))))..)--)...((((((...))))))....))))...)).))))).-- ( -25.90) >consensus AGUG_GUGGCCAAGAGUUCG__GGGAAGUGG_____CAAGAAAGGGCCCGGAAAGAAAUAGACUCGCAGAGGA_____GC_AUCUCUGAGCUCGGACUUGGACAAAA .............((((((...(((.....................)))..................(((((..........))))))))))).............. ( -3.90 = -5.82 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:50 2006