Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,179,712 – 17,179,803 |
Length | 91 |
Max. P | 0.500000 |
Location | 17,179,712 – 17,179,803 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 86.08 |
Mean single sequence MFE | -26.03 |
Consensus MFE | -15.81 |
Energy contribution | -15.90 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.14 |
Mean z-score | -3.57 |
Structure conservation index | 0.61 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17179712 91 - 23771897 GGCUCUUUUUGUCGGCUCGGGAAGUCAUAAGUCGCAAGUUCUGAGCUG-G--CGAAUAAGAG--AAC---AAAAAAAUAGAAAAAAGGAAACUGAAAAU ..((((((((((((((((((((.((........))...))))))))))-)--)))).)))))--...---...............((....))...... ( -28.30) >DroSec_CAF1 64310 91 - 1 GGCUCUUUUUGUCGGCUCGGGAAGUCAUAAGUCGCAAGUUCUGAGCUG-G--CGAAUAAGAG--AAC---AAAAAAAUGGGGAAAAAAGACCUGAAAAU ..((((((((((((((((((((.((........))...))))))))))-)--)))).)))))--...---.......(.(((........))).).... ( -27.80) >DroSim_CAF1 56645 91 - 1 GGCUCUUUUUGUCGGCUCGGGAAGUCAUAAGUCGCAAGUUCUGAGCUG-G--CGAAUAAGAG--AAC---AAAAAAAUGGGGAAAAAAGACCUGAAAAU ..((((((((((((((((((((.((........))...))))))))))-)--)))).)))))--...---.......(.(((........))).).... ( -27.80) >DroEre_CAF1 66260 90 - 1 AGCUCUUUUUGUCGGCUCGGGAAGUCAUAAGUCGCAAGUUCUGAGCUG-G--CGAAUGAGCG--AAC---AAAAAAAUAAC-AAAAGGAACCUGAAAAU .((((..(((((((((((((((.((........))...))))))))))-)--)))).)))).--...---...........-................. ( -27.80) >DroYak_CAF1 67480 93 - 1 GGCUCUUUUUGUCGGCUCGGGAAGUCAUAAGUCGCAAGUUCUGAGCUGGG--CGAAUAAGAG--UACGUAAAAAAAAUCAC-AAAAA-AAACUGAAAAU .(((((((((((((((((((((.((........))...))))))))).))--)))).)))))--)................-.....-........... ( -23.90) >DroAna_CAF1 46225 93 - 1 GGGGCUUUUUGUCGGCUCGGGAAGUCAUAAGUCGCAAGUUCUGAGCUG-CAACAAAAAGGAAAAAAU---AAAAAAAUGAA-AAGAA-ACAGUGAAAAU ....((((((((((((((((((.((........))...))))))))))-..))))))))........---...........-.....-........... ( -20.60) >consensus GGCUCUUUUUGUCGGCUCGGGAAGUCAUAAGUCGCAAGUUCUGAGCUG_G__CGAAUAAGAG__AAC___AAAAAAAUGAA_AAAAA_AAACUGAAAAU ..(((((((((.((((((((((.((........))...))))))))))....)))).)))))..................................... (-15.81 = -15.90 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:47 2006