Locus 6411

Sequence ID 3L_DroMel_CAF1
Location 17,174,526 – 17,174,622
Length 96
Max. P 0.992965
window10268

overview

Window 8

Location 17,174,526 – 17,174,622
Length 96
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 92.05
Mean single sequence MFE -17.53
Consensus MFE -15.34
Energy contribution -15.34
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.68
Structure conservation index 0.88
SVM decision value 2.36
SVM RNA-class probability 0.992965
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17174526 96 + 23771897
CACGCAACAAAAGCUGAAAGCUGCAGCACACAAAACAUUUAAUCACACUUUGCACAACUUGUUGAAAAUGCAAGCUUGCAGCUACCCCU----------CCUCCAA
...........(((((.(((((((((((......................))).(((....)))....))).))))).)))))......----------....... ( -18.15)
>DroSec_CAF1 59099 96 + 1
CACGCAACAAAAGCUGAAAGCUGCAGCACACAAAACAUUUAAUCACACUUUGCACAACUUGUUGAAAAUGCAAGCUUGCAGCUACCCCU----------CCUUCAA
...........(((((.(((((((((((......................))).(((....)))....))).))))).)))))......----------....... ( -18.15)
>DroSim_CAF1 51082 96 + 1
CACGCAACAAAAGCUGAAAGCUGCAGCACACAAAACAUUUAAUCACACUUUGCACAACUUGUUGAAAAUGCAAGCUUGCAGCUACCCCU----------CCUCCAA
...........(((((.(((((((((((......................))).(((....)))....))).))))).)))))......----------....... ( -18.15)
>DroEre_CAF1 61005 97 + 1
CACGCAACAAAAGCUGAAAGCUGCAACACACAAAACAUUUAAUCACACUUUGCACAACUUGUUGAAAAUGCAAGCUUGCAGCUACCCCUC---------CCUCCAA
...........(((((.((((((((.....((((..............))))..(((....)))....))).))))).))))).......---------....... ( -16.34)
>DroYak_CAF1 62165 97 + 1
CACGCAACAAAAGCUGAAAGCUGCAACACACAAAACAUUUAAUCACACUUUGCACAACUUGUUGAAAAUGCAAGCUUGCAGCAACCCCCU---------CCCCCAA
............((((.((((((((.....((((..............))))..(((....)))....))).))))).))))........---------....... ( -15.64)
>DroAna_CAF1 41639 106 + 1
CACGCAACAAAAGCUGAAAGCUGCAACACACAAAACAUUUAAUCACACUUUGUACAACUAGUUGAAAAUGCAAGCUUGCAGCAACCGCUAUCAGGACACCUUCCCC
............((((.((((((((....(((((..............))))).(((....)))....))).))))).))))...........(((.....))).. ( -18.74)
>consensus
CACGCAACAAAAGCUGAAAGCUGCAACACACAAAACAUUUAAUCACACUUUGCACAACUUGUUGAAAAUGCAAGCUUGCAGCUACCCCU__________CCUCCAA
............((((.((((((((.....((((..............))))..(((....)))....))).))))).))))........................ (-15.34 = -15.34 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:46 2006