Locus 6410

Sequence ID 3L_DroMel_CAF1
Location 17,173,878 – 17,173,973
Length 95
Max. P 0.618065
window10267

overview

Window 7

Location 17,173,878 – 17,173,973
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 74.20
Mean single sequence MFE -17.89
Consensus MFE -11.42
Energy contribution -11.58
Covariance contribution 0.16
Combinations/Pair 1.14
Mean z-score -1.46
Structure conservation index 0.64
SVM decision value 0.17
SVM RNA-class probability 0.618065
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17173878 95 - 23771897
CCACCAAACGGGGCAGGCUCCCUCGCGAUCUCCAACACUGCCUCUUCUCACAACUCCUACACUCAGAAAAUCAUUGAAAUAAAUACGUUGCCAGG
...((....(((((((((......))(.....)....)))))))......((((........((((.......)))).........))))...)) ( -14.13)
>DroSec_CAF1 58457 88 - 1
CCACCAAACGGGGCAGGCUCCCUCGCGAUCUCCAACACUGCCCCUUCUUAGAACUCCUACACUCAGAAAAUUAUUUAUAGAAAUAAGU-------
.........(((((((((......))(.....)....)))))))((((.((..........)).))))..((((((....))))))..------- ( -16.70)
>DroSim_CAF1 50446 83 - 1
CCACCAAACGGGGCAGGCUCCCACGCGAUCUCCAACACUGCCCCUUCGCAGAACUCCUACACUCAGAAAAUAAUUGAUACAAA------------
.........(((((((((......))(.....)....))))))).......................................------------ ( -15.20)
>DroEre_CAF1 60339 94 - 1
CCGCCAAACGGGGCAGGC-CCCACGCGUUCUCCUACACUGCCUCUUCUCGAAACUCCUACACUCAGAAAAGAAGUGCAAGAAAUAGGUUGGCACG
..(((((..((((....)-))).(...((((....((((..((.((((.((...........)))))).)).))))..))))...).)))))... ( -24.70)
>DroYak_CAF1 61497 73 - 1
CCGCCAAACGGGGC----------------------ACUGCCCCUUCUCAAAACUCCUACACUCGGAAAAUAAUUGAAAGAAAUAGGUUGGCAGG
..(((((.((((((----------------------...)))))...((((...(((.......)))......))))........).)))))... ( -18.70)
>consensus
CCACCAAACGGGGCAGGCUCCCACGCGAUCUCCAACACUGCCCCUUCUCAAAACUCCUACACUCAGAAAAUAAUUGAAAGAAAUAGGUUG_CA_G
.........(((((((.....................)))))))................................................... (-11.42 = -11.58 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:45 2006