Locus 6409

Sequence ID 3L_DroMel_CAF1
Location 17,173,433 – 17,173,528
Length 95
Max. P 0.694665
window10266

overview

Window 6

Location 17,173,433 – 17,173,528
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 87.26
Mean single sequence MFE -18.44
Consensus MFE -14.54
Energy contribution -15.70
Covariance contribution 1.16
Combinations/Pair 1.12
Mean z-score -1.64
Structure conservation index 0.79
SVM decision value 0.34
SVM RNA-class probability 0.694665
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17173433 95 - 23771897
UCUCUGGCGUUUUUCCCAACCAUCCACUCCGAAUGCCCCUGCAUUUCGCCAGCCGCCCCGCUGCUGCUGGCACUUACAAUCACUUUUAUUUCGCG
......(((.....................((((((....)))))).((((((.((......)).))))))....................))). ( -22.20)
>DroSec_CAF1 58022 95 - 1
UCUCUGGCGUUUUUCCCAACCAUCCACUCCGAAUGCCCCUGCGUUUCGCCAGCCGCCCCGCUGCUGCUGGCACUUACAAUCACUUUUAUUUCGCG
......(((.....................((((((....)))))).((((((.((......)).))))))....................))). ( -21.80)
>DroSim_CAF1 50022 95 - 1
UCUCUGGCGUUUUUCCCAACCAUCCACUCCGAAUGCCCCUGCGUUUCGCCAGCCGCCCCGCUGCUGCUGGCACUUACAAUCACUUUUAUUUCGCG
......(((.....................((((((....)))))).((((((.((......)).))))))....................))). ( -21.80)
>DroEre_CAF1 59946 95 - 1
UCUCUGCCGUUUUCCCCAACCCCCCAUCUCGAAUGCCCCUCUGUUUCGCCAGCCGCCCCGCUGCUGCUGGCACUUACAAUCACUUUUAUUUCGCG
.....((.......................(((.((......)))))((((((.((......)).)))))).....................)). ( -16.30)
>DroYak_CAF1 61161 78 - 1
UCUCUGCCGUUUUCCCCACCCCCCCAU-----------------UUCGCCUGCCGCCCCGCUGCUGCUGGCACUUACAAUCACUUUUAUUUCGCG
...........................-----------------...(((.((.((......)).)).)))........................ ( -10.10)
>consensus
UCUCUGGCGUUUUUCCCAACCAUCCACUCCGAAUGCCCCUGCGUUUCGCCAGCCGCCCCGCUGCUGCUGGCACUUACAAUCACUUUUAUUUCGCG
......(((.....................((((((....)))))).((((((.((......)).))))))....................))). (-14.54 = -15.70 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:44 2006