Locus 6407

Sequence ID 3L_DroMel_CAF1
Location 17,169,047 – 17,169,149
Length 102
Max. P 0.996419
window10264

overview

Window 4

Location 17,169,047 – 17,169,149
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 95.88
Mean single sequence MFE -22.99
Consensus MFE -21.70
Energy contribution -21.70
Covariance contribution -0.00
Combinations/Pair 1.07
Mean z-score -1.84
Structure conservation index 0.94
SVM decision value 2.69
SVM RNA-class probability 0.996419
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17169047 102 - 23771897
UCCCCUAAAUGCAUCUAAUUGCUGUCUUUGGGAGCGGAAAUAUUCUCUGAGUUCCGCACGCAUCAGAAUAAAUAUUCAAAGAAAUAUGAUUUGACGGCAAAA
..................((((((((..((.(.((((((...((....)).)))))).).))...((((....))))...............)))))))).. ( -22.80)
>DroSec_CAF1 53636 102 - 1
UCCCCUAAAUGCAUCUAAUUGCUGUCUUUAGGAGCGGAAAUAAUCUCUGAGUUCCGCACGCAUCAGAAUAAAUAUUCAAAGAAAUAUGAUUCGACGGCAAAA
..................((((((((.......((((((....((...)).))))))........((((..(((((......))))).)))))))))))).. ( -22.80)
>DroSim_CAF1 45694 102 - 1
UCCCCUAAAUGCAUCUAAUUGCUGUCUUUGGGAGCGAAAAUAAUCUCCGAGUUCCGCACGCAUCAGAAUAAAUAUUCAAAGAAAUAUGAUUCGACGGCAAAA
..................((((((((..(((((((...............))))).)).......((((..(((((......))))).)))))))))))).. ( -20.16)
>DroEre_CAF1 55826 102 - 1
UCCCCUAAAUGCAUCUAAUUGCUGUCUUUGGGAGCGGAAAUAAUCUGUGAGUUCCGCACGCAUCAGAAUAAAUAUUCAAAGAAAUAUAAUUCGACAGCAAAA
..................((((((((..((.(.((((((....((...)).)))))).).))...((((..(((((......))))).)))))))))))).. ( -24.60)
>DroYak_CAF1 56875 102 - 1
UCCCCUAAAUGCAUCUAAUUGCUGUCUUUGGGAGCGGAAAUAAUCUGUGAGUUCCGCACGCAUCAGAAUAAAUAUUCAAAGAAAUAUAAUUCGACAGCAAGA
..................((((((((..((.(.((((((....((...)).)))))).).))...((((..(((((......))))).)))))))))))).. ( -24.60)
>consensus
UCCCCUAAAUGCAUCUAAUUGCUGUCUUUGGGAGCGGAAAUAAUCUCUGAGUUCCGCACGCAUCAGAAUAAAUAUUCAAAGAAAUAUGAUUCGACGGCAAAA
..................((((((((..((.(.((((((....((...)).)))))).).))...((((..(((((......))))).)))))))))))).. (-21.70 = -21.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:42 2006