Locus 6406

Sequence ID 3L_DroMel_CAF1
Location 17,167,962 – 17,168,052
Length 90
Max. P 0.619421
window10263

overview

Window 3

Location 17,167,962 – 17,168,052
Length 90
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 77.82
Mean single sequence MFE -24.05
Consensus MFE -15.54
Energy contribution -15.73
Covariance contribution 0.20
Combinations/Pair 1.18
Mean z-score -1.32
Structure conservation index 0.65
SVM decision value 0.18
SVM RNA-class probability 0.619421
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17167962 90 + 23771897
GGGCAUGUGCAAUUAGAGUGACGUACGCUUUAUUGAUGCCCAUAGCCAUUUGGCAUGCAUUAGGGCACGGCACACAAAC--ACACUCGCAGC
..((.(((((...(((((((.....)))))))(((((((.....(((....)))..))))))).)))))))........--........... ( -23.90)
>DroGri_CAF1 35344 90 + 1
GUGUGUGUGCAAUUAAAGUGACGUACGCUUUAUUGAUGCAA-ACGGCAUUUCGCAUGCAUUAGAA-GUAGUUCACAGACCAACACUCACACG
(((((.(((....(((((((.....)))))))((((((((.-.(((....)))..))))))))..-................))).))))). ( -24.90)
>DroSim_CAF1 44593 90 + 1
GGGCAUGUGCAAUUAGAGUGACGUACGCUUUAUUGAUGCCCAUAGCCAUUUGGCAUGCAUUAGGGCACGGCACACAAAC--ACACUCGCAGC
..((.(((((...(((((((.....)))))))(((((((.....(((....)))..))))))).)))))))........--........... ( -23.90)
>DroEre_CAF1 54739 89 + 1
-GGCAUGUGCAAUUAGAGUGACGUACGCUUUAUUGAUGCCCAUAGCCAUUUGGCAUGCAUUAGGGCACGGCACACAAAC--ACACUCGCAGC
-.((.(((((...(((((((.....)))))))(((((((.....(((....)))..))))))).)))))))........--........... ( -23.90)
>DroMoj_CAF1 64664 68 + 1
GUGUGUGUACAAUUAGAGUGACGUACGCUUUAUUGAUGCGA-ACGCCAUUUGGCAUGCAUUAGAA-GUAG----------------------
.......(((...(((((((.....)))))))((((((((.-..(((....))).))))))))..-))).---------------------- ( -17.30)
>DroAna_CAF1 35032 89 + 1
GGGCCUGUGCAAUUAGAGUGACGUACGCUUUAUUGAUGCCCAUAGCCAUUUGGCAUGCAUUAGAGCACGUCACACAAAC--ACAUACCCCA-
(((..((((........(((((((..((((((.(((((((...........))))).)).))))))))))))).....)--)))..)))..- ( -30.42)
>consensus
GGGCAUGUGCAAUUAGAGUGACGUACGCUUUAUUGAUGCCCAUAGCCAUUUGGCAUGCAUUAGAGCACGGCACACAAAC__ACACUCGCAGC
.....(((((...(((((((.....)))))))(((((((.....(((....)))..))))))).)))))....................... (-15.54 = -15.73 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:41 2006