Locus 6403

Sequence ID 3L_DroMel_CAF1
Location 17,162,870 – 17,162,968
Length 98
Max. P 0.591469
window10258

overview

Window 8

Location 17,162,870 – 17,162,968
Length 98
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 81.13
Mean single sequence MFE -30.04
Consensus MFE -19.36
Energy contribution -19.16
Covariance contribution -0.20
Combinations/Pair 1.18
Mean z-score -1.71
Structure conservation index 0.64
SVM decision value 0.12
SVM RNA-class probability 0.591469
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17162870 98 + 23771897
UUUCUACUCUUUUUUUUUUUGCGAGAAAUGGCGAAUGUUCUGGCAAGGAUUUGUACAUACAUUUGUACGCUCUACACACGUUUUCAGUGUGUAUGGA------------G
......((((.....(((((((.((((((.....)).)))).)))))))...(((((......)))))....(((((((.......))))))).)))------------) ( -25.20)
>DroSec_CAF1 47170 105 + 1
UUUCUACUCUUUUU---UUUGCGAGGAAUGGCGAAUGUUCUGGCAAGGAUUUGUACAUACAUUUGUACGCUCUACACACGUUUUCAGUGUGUGAGGA--AGGGGUGGGUG
..((((((((((((---(((((..((((((.....)))))).))))))....(((((......))))).(((.((((((.......)))))))))))--))))))))).. ( -35.40)
>DroSim_CAF1 39186 105 + 1
UUUCUACUCUUUGG---CGACUGAGGAAUGGCGAAUGUUCUGGCAAGGAUUUGUACAUACAUUUGUACGCUCUACACACGUUUUCAGUGUGUGAGGA--AGGGGUGGGUG
..((((((((((..---.............((((((((....((((....))))....))))))))...(((.((((((.......))))))))).)--))))))))).. ( -31.60)
>DroEre_CAF1 49202 105 + 1
UUUCUACUCUUUU-----UUGCGAGGAAUGGCGUAUGUUCUGGCAAGGAUUUGUACAUACAAGUGAAUGCUCUACACACGUUUUCAGUGUGUGUGUGUGAAGGGUGCCAG
....(((((((((-----((((..((((((.....)))))).)))))))....(((((((.(((....)))..((((((.......))))))))))))).)))))).... ( -28.20)
>DroYak_CAF1 50152 95 + 1
UUUCUACUCUUCU-----CUGCGAGGAAUGGCGAAUGUUCUGGCAAGGAUUUGUACAUACGAUUGUACGCUCCACACACGUUUGCAGUGUGUGAGUGAGG----------
......(((.((.-----.(((..((((((.....)))))).)))..))...(((((......)))))((((.((((((.......))))))))))))).---------- ( -29.80)
>consensus
UUUCUACUCUUUU_____UUGCGAGGAAUGGCGAAUGUUCUGGCAAGGAUUUGUACAUACAUUUGUACGCUCUACACACGUUUUCAGUGUGUGAGGA__A_GGGUG___G
......................(((.....((((((((....((((....))))....))))))))...)))(((((((.......)))))))................. (-19.36 = -19.16 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:36 2006