Locus 6402

Sequence ID 3L_DroMel_CAF1
Location 17,161,626 – 17,161,717
Length 91
Max. P 0.930240
window10257

overview

Window 7

Location 17,161,626 – 17,161,717
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 88.20
Mean single sequence MFE -37.72
Consensus MFE -31.24
Energy contribution -33.24
Covariance contribution 2.00
Combinations/Pair 1.19
Mean z-score -1.90
Structure conservation index 0.83
SVM decision value 1.20
SVM RNA-class probability 0.930240
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17161626 91 - 23771897
UAGUUGGAGGCUCUGCGAGGGCUGAGGAUGGCACUCCGCCCUCCAGCCGUCCUCAGCCGCUCCUGCCGAGGAUUCCCCUUCUAAAGCUGGA
(((((...(((...(.((((((((((((((((.............))))))))))))).)))).)))((((......))))...))))).. ( -41.22)
>DroSec_CAF1 45925 90 - 1
UAGUUGGCGGCUCUGCGGGGGCUGAGGAUGGCGCCCC-UCCUCCAGCCGUCCUCAGCUGCUCAUGCCGAGGAUUCCCCUUCUAAAGCUGGA
...(..(((((..((.((.(((((((((((((.....-.......))))))))))))).)))).)))((((......))))....))..). ( -41.40)
>DroSim_CAF1 37941 90 - 1
UAGUUGGCGGCUCUGCGAGGGCUGAGGAUGGCGCCCC-UCCUCCAGCCAUCCUCAGCCGCUCAUGCCGAGGAUUCCCCUUCUAAAGCUGGA
...(..(((((.....((((((((((((((((.....-.......))))))))))))).)))..)))((((......))))....))..). ( -43.60)
>DroEre_CAF1 47992 84 - 1
UAGUUGGCGGCUCUGCGAGGGCUGAGGAUUGCGCCGG-UCCUCCA------UUCAGCCGCUCCUGCCGAGGAUUCCCCCUCUAAAGCUGGA
...(..(((((...(.(((((((((((((((...)))-)))....------.)))))).)))).)))((((......))))....))..). ( -33.10)
>DroYak_CAF1 48911 84 - 1
UAGUUGGCGGCUCUGCGAGGGCCGAGGAUUGCGCCCG-UCCUCCC------UUCAGCCGCUCCUGCCGAGGAUUCCCCUUCUAAAGCUGGA
......((((((....(((((..((((((.......)-)))))))------)))))))))(((.((.((((......))))....)).))) ( -29.30)
>consensus
UAGUUGGCGGCUCUGCGAGGGCUGAGGAUGGCGCCCC_UCCUCCAGCC_UCCUCAGCCGCUCCUGCCGAGGAUUCCCCUUCUAAAGCUGGA
...(..(((((.....((((((((((((((((.............))))))))))))).)))..)))((((......))))....))..). (-31.24 = -33.24 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:35 2006