Locus 6401

Sequence ID 3L_DroMel_CAF1
Location 17,158,579 – 17,158,688
Length 109
Max. P 0.526980
window10256

overview

Window 6

Location 17,158,579 – 17,158,688
Length 109
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 88.02
Mean single sequence MFE -28.81
Consensus MFE -24.05
Energy contribution -24.05
Covariance contribution 0.00
Combinations/Pair 1.13
Mean z-score -1.37
Structure conservation index 0.83
SVM decision value -0.01
SVM RNA-class probability 0.526980
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17158579 109 + 23771897
UGUGUCUCUCUCUCUCCUUCUGUUUUUUGCACAGCGAAAAAUAAACA-GAGUUAUAGUUUUAAAUUGUGACUAAAGGGGUUCCCAACUGGCGCAGCUGAUGCUGCAGGCA
..(((((......((((((.((((((((((...))))))))))....-.(((((((((.....))))))))).))))))............(((((....)))))))))) ( -31.60)
>DroSec_CAF1 42896 107 + 1
UGUGUCUCCC--UCUCCCUCUGUUUUUUGCACAGCGAAAAAUAAACA-GAGUUAUAGUUUUAAAUUGUAACUGAAGGGGUUUCCAACUGGCGCAGCUGCUGCUGCUGGCA
..((((.(((--..((....((((((((((...))))))))))....-.(((((((((.....)))))))))))..)))............(((((....))))).)))) ( -31.00)
>DroSim_CAF1 34932 107 + 1
UGUGUCUCUC--UCUCCCUCUGUUUUUUGCACAGCGAAAAAUAAACA-GAGUUAUAGUUUUAAAUUGUAACUGAAGGGCUUCCCAACUGGCGCAGCUGCUGCUGCUAGCA
((((((....--...((((.((((((((((...))))))))))....-.(((((((((.....)))))))))..))))..........))))))(((((....)).))). ( -28.93)
>DroYak_CAF1 45659 100 + 1
U--------C--UCUUUCCCUGUUUUUUGCACAGCGAAAAAUAAACACGAGUUAUAGUUUUAAAUGGUGACUGAAGGGGUUCGCAACUGGCGCAUCUGCUGCUGCUGGCA
.--------(--((((((..((((((((((...))))))))))..(((.(.(((......))).).)))...))))))).......(..(((((.....))).))..).. ( -23.70)
>consensus
UGUGUCUCUC__UCUCCCUCUGUUUUUUGCACAGCGAAAAAUAAACA_GAGUUAUAGUUUUAAAUUGUAACUGAAGGGGUUCCCAACUGGCGCAGCUGCUGCUGCUGGCA
................((((((((((((((...))))))))).......(((((((((.....)))))))))..)))))..........(((((((....)))))..)). (-24.05 = -24.05 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:34 2006