Locus 64

Sequence ID 3L_DroMel_CAF1
Location 250,007 – 250,104
Length 97
Max. P 0.704178
window91

overview

Window 1

Location 250,007 – 250,104
Length 97
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 74.65
Mean single sequence MFE -25.14
Consensus MFE -17.82
Energy contribution -18.38
Covariance contribution 0.56
Combinations/Pair 1.14
Mean z-score -1.28
Structure conservation index 0.71
SVM decision value 0.36
SVM RNA-class probability 0.704178
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 250007 97 + 23771897
CCGAUGGUACAA--UGCAAAUCACAACUGCGUGUAGCGAUCAGACCCAAUGGUAAAAGUAAAAGACCAUUGGCUUUAACUACAGGUAGUCUGUGCAGGA
((....((....--.))....(((((((((.(((((.....(((.((((((((...........)))))))).)))..))))).))))).))))..)). ( -26.70)
>DroSec_CAF1 17936 76 + 1
CCG-----------------UCACAGCUGCGUGUGGCGAUCAGACCGUAUGGUAA------GAUACCACCGGCUUUUACUACAGGUAGUCUGUGCAGGA
((.-----------------.(((((((((.(((((..(..((.(((..(((((.------..))))).))))).)..))))).)))).)))))..)). ( -29.80)
>DroSim_CAF1 18406 76 + 1
ACG-----------------UCACAGCUGCGUGUGGCGAUCAGACCCUAUGGUAA------GAUACCACCGGCUUUUACUACAGCUAGUCUGUGCAGGA
..(-----------------.(((((((((.(((((..(..((.((...(((((.------..)))))..)))).)..))))))).)).)))))).... ( -21.60)
>DroEre_CAF1 17982 91 + 1
CCGAUGUUACAAAA-GCAUGUCACAGCUGCGUGUAGCGAUCAGACCCAAUGGUAA------GAGACC-CCGGCAUUUACUACAGGCAGUCUGUGCAGGA
((.(((((.....)-))))(.(((((((((.(((((..(...(.((....(((..------...)))-..)))..)..))))).)))).)))))).)). ( -28.20)
>DroYak_CAF1 17905 91 + 1
CCGAUGUUACAAAGUGCGUGUCACAGCUGCGUGUAGCGAUCAGACUUAAAGGUAA------GAGACCACCGGCAUUUACUAAAGGCAGUCUGUAGAA--
....(((((((....((........))....)))))))..((((((....(((((------(.(.((...))).))))))......)))))).....-- ( -19.40)
>consensus
CCGAUG_UACAA___GC___UCACAGCUGCGUGUAGCGAUCAGACCCAAUGGUAA______GAGACCACCGGCUUUUACUACAGGUAGUCUGUGCAGGA
.....................(((((((((.(((((..(...(.((...((((...........))))..)))..)..))))).)))).)))))..... (-17.82 = -18.38 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:25 2006