| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,138,319 – 17,138,492 |
| Length | 173 |
| Max. P | 0.998935 |
| Location | 17,138,319 – 17,138,415 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 87.60 |
| Mean single sequence MFE | -34.93 |
| Consensus MFE | -25.12 |
| Energy contribution | -25.56 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.842003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17138319 96 + 23771897 AACUUUCACAAGUGGCUUCCUGCCUUGGCUCGCCU--CGCACUUUAUAAGCCUACACAAGCCGGGCGGAGGGCUCUGCUCUUUCGAGGGGAGCCAAAU .((((....))))(((.....)))(((((((.(((--((..........((........)).(((((((....)))))))...))))).))))))).. ( -36.70) >DroSec_CAF1 22775 96 + 1 AACUUUCACAAGUGGCUUCCUGCCUUGGCUCGCCU--CGCACUUUAUAAGCCUACAAAAGCCGGGCGGAGGGCUCUGCUCUUUCGAGGGGAGCCAAAU .((((....))))(((.....)))(((((((.(((--((..........((........)).(((((((....)))))))...))))).))))))).. ( -36.70) >DroEre_CAF1 23836 96 + 1 AACUUUCACAAGUGGCUUCCUGCCUUGGCUCGCCU--CGCACUUUAUAAGCCUACACGGGCUGGGCGGAGGGCUCUGCUCUUUCGAGGGGAGCCAAAU .((((....))))(((.....)))(((((((.(((--((.........(((((....)))))(((((((....)))))))...))))).))))))).. ( -42.70) >DroYak_CAF1 25026 96 + 1 AACUUUCACAAGUGGCUUCCUGCCUUGGCUCGCCU--CGCACUUUAUAAGCCUACGUCUGCCGGGCGGAGGGCUCUGCUCUUUCGAGGGGAGCCAAAU .((((....))))(((.....)))(((((((.(((--((.........(((((.((((.....))))..))))).........))))).))))))).. ( -38.87) >DroAna_CAF1 4995 90 + 1 AACUUUCACAAGUGGCUUCCUGCCUUGGCUCGCCUCUCGCACUUUAUAAGCCUACAAAA--UGGGAGCGGGGCUACUUUUUUUUG------UCCAAGG ..(((..(((((.(((.....))).((((.(.((.(((.((.(((.((....)).))).--)).))).)))))))......))))------)..))). ( -19.70) >consensus AACUUUCACAAGUGGCUUCCUGCCUUGGCUCGCCU__CGCACUUUAUAAGCCUACAAAAGCCGGGCGGAGGGCUCUGCUCUUUCGAGGGGAGCCAAAU .((((....))))(((.....)))(((((((.(((...((.........))...........(((((((....))))))).....))).))))))).. (-25.12 = -25.56 + 0.44)
| Location | 17,138,375 – 17,138,492 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 68.03 |
| Mean single sequence MFE | -29.26 |
| Consensus MFE | -17.10 |
| Energy contribution | -19.35 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.58 |
| SVM decision value | 3.29 |
| SVM RNA-class probability | 0.998935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17138375 117 - 23771897 GUGGGCGGUGCCUCUACUUUGUCCUUACCCCCA-UGAACACCCCUCCCCCCCCUCACCAUUCCACCCCUGACAACCCAAUUUGGCUCCCCUCGAAAGAGCAGAGCCCUCCGCCCGGCU .(((((((.(........(((((.........(-((.....................))).........)))))........(((((..(((....)))..)))))).)))))))... ( -30.47) >DroSec_CAF1 22831 101 - 1 GUGGGCGGCGCCUCCACUUUGUCCUUACCCCCA-UGGACAGCCCCAGC----------------CCCCUGACAACCCAAUUUGGCUCCCCUCGAAAGAGCAGAGCCCUCCGCCCGGCU .(((((((.(........((((((.........-.))))))...(((.----------------...)))............(((((..(((....)))..)))))).)))))))... ( -35.40) >DroEre_CAF1 23892 102 - 1 GUGGGCGGCGCCUCUACUGUGUCCUUACCCCCU-UGCCCUCCCCCUCC---------------CCCGCCAACAGCCCAAUUUGGCUCCCCUCGAAAGAGCAGAGCCCUCCGCCCAGCC .(((((((.(......((((.............-..............---------------.......))))........(((((..(((....)))..)))))).)))))))... ( -30.38) >DroAna_CAF1 5053 94 - 1 GUGGGCGGCGCCUCUACUUUGCCCUCAACCCCCCUCAUCACCCGUCU----------------AUGUCCGCCAUCCCCCCUUGGA------CAAAAAAAAGUAGCCCCGCUCCCA--U (((((.((((...((((((((....).....................----------------.((((((...........))))------))....)))))))...))))))))--) ( -20.80) >consensus GUGGGCGGCGCCUCUACUUUGUCCUUACCCCCA_UGAACACCCCCCCC_______________ACCCCCGACAACCCAAUUUGGCUCCCCUCGAAAGAGCAGAGCCCUCCGCCCAGCU .(((((((.(.........((((..............................................)))).........(((((..(((....)))..)))))).)))))))... (-17.10 = -19.35 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:25 2006