Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,123,591 – 17,123,687 |
Length | 96 |
Max. P | 0.968615 |
Location | 17,123,591 – 17,123,687 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 91.15 |
Mean single sequence MFE | -14.72 |
Consensus MFE | -14.70 |
Energy contribution | -14.70 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.83 |
Structure conservation index | 1.00 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968615 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17123591 96 + 23771897 UCAAACUUUUGCCAUUUGUGGCCAACAUAUUUUGAAGUUGGCCCGCACACACAGCAUUCUUGUUAGCCACCCACCAUUCCACUUCCAUUCUCCCCA ...(((...(((....((((((((((..........))))).)))))......))).....)))................................ ( -14.70) >DroSec_CAF1 7879 96 + 1 UCAAACUUUUGCCAUUUGUGGCCAACAUAUUUUGAAGUUGGCCCGCACACACAGCAUUCUUGUUAGCCACCCACCAUUCCACUCCCAUUCUUCCCA ...(((...(((....((((((((((..........))))).)))))......))).....)))................................ ( -14.70) >DroSim_CAF1 2210 96 + 1 UCAAACUUUUGCCAUUUGUGGCCAACAUAUUUUGAAGUUGGCCCGCACACACAGCAUUCUUGUUAGCCACCCACCAUUCCACUCCCAUUCUUCCCA ...(((...(((....((((((((((..........))))).)))))......))).....)))................................ ( -14.70) >DroYak_CAF1 8255 82 + 1 UCAAACUUUUGCCAUUUGUGGCCAACAUAUUUUGAAGUUGGCCCGCACACACAGCAUUCUUGUUAGCCACCCACC--------------CGCCCCA ..........((.....(((((.((((......(((((((...........)))).))).)))).))))).....--------------.)).... ( -14.80) >consensus UCAAACUUUUGCCAUUUGUGGCCAACAUAUUUUGAAGUUGGCCCGCACACACAGCAUUCUUGUUAGCCACCCACCAUUCCACUCCCAUUCUCCCCA ...(((...(((....((((((((((..........))))).)))))......))).....)))................................ (-14.70 = -14.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:18 2006