Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,116,846 – 17,116,959 |
Length | 113 |
Max. P | 0.977328 |
Location | 17,116,846 – 17,116,959 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 89.80 |
Mean single sequence MFE | -24.08 |
Consensus MFE | -18.98 |
Energy contribution | -19.23 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.12 |
Mean z-score | -2.26 |
Structure conservation index | 0.79 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908182 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17116846 113 + 23771897 UUUUCCUCGUCUUUCUGCCACUGGUUUUCCUUCGCCACAGCU------UCAGAUUCGGCUUCUCAGCGCAGCUCAACGCACAUUUUUAUGAGUUCAUUCGCUGCGCUCCUUUUAAUACU ........(((..((((....((((........)))).....------.))))...))).....((((((((.....((.(((....))).))......))))))))............ ( -23.50) >DroSec_CAF1 1306 113 + 1 UUUUCCUCGCCUCUCUGCCACUGGUUUUCCAUUGCUUCAGCU------UGAGAUUCGGCUUCUCAGCGCAGCUCAACGCACAUUUUUAUGAGUUCAUUCGCUGCGCUCCUUUUAAUACU ........(((((((.((((.(((....))).)).....)).------.))))...))).....((((((((.....((.(((....))).))......))))))))............ ( -26.80) >DroEre_CAF1 1178 119 + 1 UUUUCCUCGCUUUUCUGCCACUGGUUUUCCUUUGCUUCAGCUUCGACUUCAGAUUCGACUUCUCAGCGCAGCUCAACGCACAUUUUUAUGAGUUCAUUCGCUGAGCUGCUUUUUAUACU ........(((...(((.((..((....))..))...)))..((((........))))......)))((((((((.((...((((....)))).....)).)))))))).......... ( -22.10) >DroYak_CAF1 1137 113 + 1 CUUUCCUCGCUUUUCUGCCACCGGGUUUCCUUUGCCUCAGCU------UUAGAUUCGGCUUCUUAGCGCAGCUCAACGCACAUUUUUAUGAGUUCAUUCGCUGCGCUCCUUUUUAUACU ........((......))..((((((((.....((....)).------..))))))))......((((((((.....((.(((....))).))......))))))))............ ( -23.90) >consensus UUUUCCUCGCCUUUCUGCCACUGGUUUUCCUUUGCCUCAGCU______UCAGAUUCGGCUUCUCAGCGCAGCUCAACGCACAUUUUUAUGAGUUCAUUCGCUGCGCUCCUUUUAAUACU ........(((..((((.....((....))...((....))........))))...))).....((((((((.....((.(((....))).))......))))))))............ (-18.98 = -19.23 + 0.25)
Location | 17,116,846 – 17,116,959 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 89.80 |
Mean single sequence MFE | -30.22 |
Consensus MFE | -24.85 |
Energy contribution | -24.72 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.08 |
Mean z-score | -2.75 |
Structure conservation index | 0.82 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17116846 113 - 23771897 AGUAUUAAAAGGAGCGCAGCGAAUGAACUCAUAAAAAUGUGCGUUGAGCUGCGCUGAGAAGCCGAAUCUGA------AGCUGUGGCGAAGGAAAACCAGUGGCAGAAAGACGAGGAAAA ............((((((((.((((....(((....)))..))))..))))))))......((...(((..------..((((.((...((....)).)).))))..)))...)).... ( -31.30) >DroSec_CAF1 1306 113 - 1 AGUAUUAAAAGGAGCGCAGCGAAUGAACUCAUAAAAAUGUGCGUUGAGCUGCGCUGAGAAGCCGAAUCUCA------AGCUGAAGCAAUGGAAAACCAGUGGCAGAGAGGCGAGGAAAA ............((((((((.((((....(((....)))..))))..)))))))).....(((...((((.------.((....))..(((....)))......)))))))........ ( -30.50) >DroEre_CAF1 1178 119 - 1 AGUAUAAAAAGCAGCUCAGCGAAUGAACUCAUAAAAAUGUGCGUUGAGCUGCGCUGAGAAGUCGAAUCUGAAGUCGAAGCUGAAGCAAAGGAAAACCAGUGGCAGAAAAGCGAGGAAAA ..........(((((((((((.....((..........)).)))))))))))(((..((..(((....)))..))..))).....((..((....))..))((......))........ ( -30.80) >DroYak_CAF1 1137 113 - 1 AGUAUAAAAAGGAGCGCAGCGAAUGAACUCAUAAAAAUGUGCGUUGAGCUGCGCUAAGAAGCCGAAUCUAA------AGCUGAGGCAAAGGAAACCCGGUGGCAGAAAAGCGAGGAAAG .((.........((((((((.((((....(((....)))..))))..))))))))..(..((((.......------.((....))...(....).))))..)......))........ ( -28.30) >consensus AGUAUAAAAAGGAGCGCAGCGAAUGAACUCAUAAAAAUGUGCGUUGAGCUGCGCUGAGAAGCCGAAUCUGA______AGCUGAAGCAAAGGAAAACCAGUGGCAGAAAAGCGAGGAAAA .((.........((((((((.((((....(((....)))..))))..)))))))).....((((..............((....))...((....))..))))......))........ (-24.85 = -24.72 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:14 2006