Locus 6390

Sequence ID 3L_DroMel_CAF1
Location 17,107,234 – 17,107,324
Length 90
Max. P 0.645227
window10232

overview

Window 2

Location 17,107,234 – 17,107,324
Length 90
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 74.78
Mean single sequence MFE -16.91
Consensus MFE -13.38
Energy contribution -13.38
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -0.73
Structure conservation index 0.79
SVM decision value 0.23
SVM RNA-class probability 0.645227
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17107234 90 - 23771897
CUUGGAAUUGCUAUCAGUGUUACAGCUGGCGGCGGCUUUUCCCCCGCUCUUCCUCUAU---------CCCAUGCCCCAGCCCUUCGCCCAUUUUCCGCC
...((((.....((..(((.....(((((.((((........................---------....)))))))))....)))..)).))))... ( -16.99)
>DroSim_CAF1 69348 90 - 1
CUUGGAAUUGCUAUCAGUGUUACAGCUGGCGGCGGCUUUUCCCCCGCUUUUCCUCUAU---------CCCAUGCCCCAUCCCAUCGCCCAUUUUCCGCC
...((((..((...((((......))))((((.((......))))))...........---------..................)).....))))... ( -16.80)
>DroEre_CAF1 65436 77 - 1
CUUGGAAUUGCUAUCAGUGUUACAGCUGGCGGCGGCUUUUCC-CCGCUUUUC---------------------CUCCAUCCCUGCCCCCAUUUCCCGCC
...((((.((....((((......))))((((.((.....))-)))).....---------------------...............)).)))).... ( -15.90)
>DroYak_CAF1 68424 99 - 1
CUUGGAAUUGCUAUCAGUGUUACAGCUGGCGGCGGCUUUUCCCCCACUUUUUCUCUCUGCCCCACGCCCCACGCCCCAUCCCCGCCCCCAUUUCCCACA
...((((.((.....(((......)))(((((.(((......................)))....((.....)).......)))))..)).)))).... ( -16.45)
>DroAna_CAF1 66752 75 - 1
CUCGGAAUUGCUAUCAGUGUUACAGCUGGCGGCGGCUUUUCCG-ACCUCCUC---------------------UUAGAGUCCUUCCCCCACCU--CGAA
.(((((((((((..((((......))))..)))))...)))))-).(((...---------------------...)))..............--.... ( -18.40)
>consensus
CUUGGAAUUGCUAUCAGUGUUACAGCUGGCGGCGGCUUUUCCCCCGCUUUUCCUCU_U_________CCCA_GCCCCAUCCCUUCCCCCAUUUCCCGCC
...(((((((((..((((......))))..)))))...))))......................................................... (-13.38 = -13.38 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:12 2006