Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,882,615 – 1,882,717 |
Length | 102 |
Max. P | 0.880622 |
Location | 1,882,615 – 1,882,717 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 90.27 |
Mean single sequence MFE | -24.67 |
Consensus MFE | -21.32 |
Energy contribution | -21.20 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -1.57 |
Structure conservation index | 0.86 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880622 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1882615 102 + 23771897 GACUUUCAAACUGUUCAAAUGAGACAAUUUAAAUGGUCAGUAAUAUCAGUAAUAUUAGCUGGGAGGCUUAAGUGAAACAUUUGCCUGCUGGGAGGUCUGUUC (((((((..((((((.((((......)))).))))))((((....(((((.......))))).((((..(((((...))))))))))))))))))))..... ( -24.50) >DroSec_CAF1 5030 93 + 1 GACUUUCAAACUGUUUAAAUGAGACAAUUUAAAUGGUCAGU---------AAUAUUAGCUGGGAGGCCUAAGUGAAACAUUUGCCGGCUGGGAGGUCUGUGC (((((((..(((((((((((......)))))))))))....---------.....(((((((.(((.............))).))))))))))))))..... ( -24.92) >DroSim_CAF1 5164 93 + 1 GACUUUCAAACUGUUUAAAUGAGACAAUUUAAAUGGUCAGU---------AAUAUUAGCUGGGAGGCCUAAGUGAAACAUUUGCCGGCUGGGAGGUCUGUGC (((((((..(((((((((((......)))))))))))....---------.....(((((((.(((.............))).))))))))))))))..... ( -24.92) >DroEre_CAF1 5074 92 + 1 GACUUUCA-GCUGUUUAAAUGAGACAAUUUAAAUGGUAAGU---------AAGAUUAGCUGGGAGGCCUAAGUGAAACAUUUGUUGGCUGGGGGGCCUAUGC .((((...-(((((((((((......)))))))))))))))---------.......((....((((((.(((..(((....))).)))...))))))..)) ( -24.90) >DroYak_CAF1 5236 93 + 1 GACUUUCAAACUGUUUAAAUGAGACAAUUUAAAUGGUCAGU---------AAUAUUAGCUGGGAGGCUUAAGUGAAACAUUUGCUGGCUGGGAGGUCUAUGC (((((((.....((((((((......))))))))(((((((---------((....((((....))))............))))))))).)))))))..... ( -24.09) >consensus GACUUUCAAACUGUUUAAAUGAGACAAUUUAAAUGGUCAGU_________AAUAUUAGCUGGGAGGCCUAAGUGAAACAUUUGCCGGCUGGGAGGUCUGUGC (((((((..(((((((((((......)))))))))))..................(((((((.(((.............))).))))))))))))))..... (-21.32 = -21.20 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:22 2006