Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,096,048 – 17,096,153 |
Length | 105 |
Max. P | 0.722087 |
Location | 17,096,048 – 17,096,153 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 87.23 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -18.81 |
Energy contribution | -19.60 |
Covariance contribution | 0.79 |
Combinations/Pair | 1.06 |
Mean z-score | -2.10 |
Structure conservation index | 0.82 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17096048 105 - 23771897 AUCAAACACUAAUUUUCUGUUAGUGCAACAGACCACACUCAAAGUGCUGGCCACUGCAGUUUGAAUCGCUUUUUAACAACGCUGCAAUUUCUGUGCCCAUUUUGA .((((((((((((.....)))))))..(((((((((((.....))).)))....(((((((((((......)))))....))))))...)))))......))))) ( -25.60) >DroSec_CAF1 54229 105 - 1 AUCCAACACUAAUUUUCUGUUAGUGCACCAGACCACACUCAAAGUGCUGGCCACUGCAGCUUGAAUCGCUUUUUAACAACGCUGCAAUUUCUGUGCCCAUUUUGA ......(((((((.....))))))).............((((((((..(((((.(((((((((((......)))))....)))))).....)).))))))))))) ( -25.00) >DroSim_CAF1 57580 105 - 1 AUCCAACACUAAUUUUCUGUUAGUGCAACAGACCACACUCAAAGUGCUGGCCACUGCAGUUUGAAUCGCUUUUUAACAACGCUGCAAUUUCUGUGCCCAUUUUGA ......(((((((.....)))))))..(((((((((((.....))).)))....(((((((((((......)))))....))))))...)))))........... ( -23.90) >DroEre_CAF1 54312 104 - 1 AUCAAACAGCAAUUUUCUGUCAGUGCA-CAGACCACACUCAAAGUGCUGGCCACUGCAGUUUGAAUCGCUUUUUAACAACGCUGCAAUUUCUGUGCCCAUUUUGA .((((((((.......))))..(.(((-((((((((((.....))).)))....(((((((((((......)))))....))))))...))))))).)...)))) ( -26.20) >DroYak_CAF1 57125 104 - 1 UACAAACACUAAUUUUCUGUUAGUGCA-CAAACCACACUCAAAGUGCUGGCCACUGCAGUUUGAAUCGCUUUUUAACAACGCUGCAAUUUCUGUGCCCAUUUUGA ..((((.((((((.....))))))(((-((..((((((.....))).)))....(((((((((((......)))))....)))))).....)))))....)))). ( -24.00) >DroAna_CAF1 54860 80 - 1 -----------------------UGCAACC--ACACACACAAAGUGCUGGCCACUGCAGUUUGAAUCGCUUUUUAACAACGCUGCAAUUUCUGAACCCAUUUUGU -----------------------.((((((--((((.......))).)))....(((((((((((......)))))....))))))...............)))) ( -13.20) >consensus AUCAAACACUAAUUUUCUGUUAGUGCAACAGACCACACUCAAAGUGCUGGCCACUGCAGUUUGAAUCGCUUUUUAACAACGCUGCAAUUUCUGUGCCCAUUUUGA ......(((((((.....))))))).............((((((((..(((((.(((((((((((......)))))....)))))).....)).))))))))))) (-18.81 = -19.60 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:06 2006