Locus 6385

Sequence ID 3L_DroMel_CAF1
Location 17,094,472 – 17,094,574
Length 102
Max. P 0.863698
window10226

overview

Window 6

Location 17,094,472 – 17,094,574
Length 102
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 95.18
Mean single sequence MFE -21.83
Consensus MFE -19.72
Energy contribution -19.91
Covariance contribution 0.19
Combinations/Pair 1.04
Mean z-score -1.41
Structure conservation index 0.90
SVM decision value 0.84
SVM RNA-class probability 0.863698
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17094472 102 + 23771897
ACUUAUGGCCACCAACUUUCGCCAUGAGUCGUUCGGCCAUUUUGUGCAUUUUAUGUACUACAUGCAUGGC-CCUUAUUCUCUUUCUCUCGCCUGCAAGUGUGU
(((((((((...........))))))))).....((((((...((((((...)))))).......)))))-)..............(.(((......))).). ( -23.40)
>DroSec_CAF1 52555 102 + 1
ACUUAUGGCCACCAACUUUCGCCAUGAGUCGUUCGGCCAUUUUGUGCAUUUUAUGUACUACAUGCAUGGC-CCUUAUUCUCUUUCUCUCGCCUGCAAGUGUGU
(((((((((...........))))))))).....((((((...((((((...)))))).......)))))-)..............(.(((......))).). ( -23.40)
>DroSim_CAF1 55907 102 + 1
ACUUAUGGCCACCAACUUUCGCCAUGAGUCGUUCGGCCAUUUUGUGCAUUUUAUGUACUACAUGCAUGGC-CCUUAUUCUCUUUCUCUCGCCUGCAAGUGUGU
(((((((((...........))))))))).....((((((...((((((...)))))).......)))))-)..............(.(((......))).). ( -23.40)
>DroEre_CAF1 52618 102 + 1
ACUUAUGGCCACCAACUUUCGCCAUGAGUCGUUCGGCCAUUUUGUGCAUUUUAUGUACUACAUGCAUGGC-CCUUAUUCUCUUUCUCUCGCCUGCAAGUGUGU
(((((((((...........))))))))).....((((((...((((((...)))))).......)))))-)..............(.(((......))).). ( -23.40)
>DroYak_CAF1 55439 102 + 1
ACUUAUGGCCACCAACUUUCGCCAUGAGUCGUUCGGCCAUUUUGUGCAUUUUAUGUACUACAUGCAUGGC-CCUUAUUCUCUUUCUCUCGCCUGCAAUUGUGU
(((((((((...........))))))))).....((((((...((((((...)))))).......)))))-)............................... ( -22.90)
>DroAna_CAF1 53249 99 + 1
ACUUAUGGCCACCAACUUUCGCUAUGAGUCGUUCGACCAUUUUGUGCAUUUUAUGUACUACAUGCAUGUCCCCUUAUUCACCAUCUU----CUGCAUCUGUGU
(((((((((...........))))))))).....((((((...((((((...))))))...)))...))).................----............ ( -14.50)
>consensus
ACUUAUGGCCACCAACUUUCGCCAUGAGUCGUUCGGCCAUUUUGUGCAUUUUAUGUACUACAUGCAUGGC_CCUUAUUCUCUUUCUCUCGCCUGCAAGUGUGU
(((((((((...........)))))))))..............((((((...))))))((((((((.(((...................)))))))..)))). (-19.72 = -19.91 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:03 2006