Locus 6384

Sequence ID 3L_DroMel_CAF1
Location 17,092,828 – 17,092,926
Length 98
Max. P 0.993350
window10225

overview

Window 5

Location 17,092,828 – 17,092,926
Length 98
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 83.69
Mean single sequence MFE -16.45
Consensus MFE -13.31
Energy contribution -13.12
Covariance contribution -0.19
Combinations/Pair 1.08
Mean z-score -2.81
Structure conservation index 0.81
SVM decision value 2.39
SVM RNA-class probability 0.993350
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17092828 98 - 23771897
CUCUCGAGGGGAUUUUCGAUUUUCUCGAU--UUCCUCGAUUUUCCGCAACCCAUCGGAAAACCCAAACCCAAUCCAAC-CCCCAACCCAAAUGAAACUCAA
...((((((..(...((((.....)))))--..))))))(((((((........))))))).................-...................... ( -20.00)
>DroSec_CAF1 50988 88 - 1
CUCUCGAGGGGAUUUUCGAUUUUCUCGAU--UUCCUCGAUUUUCCACAACCCAUCUGAAAACCCAA-----------UGCCCCCACCCAAAUGAAACUCAA
...((((((..(...((((.....)))))--..))))))...........................-----------........................ ( -14.00)
>DroSim_CAF1 53926 89 - 1
CUCUCGAGGGGAUUUUCGAUUUUCUCGAUCUUUCCUCGAUUUCCCGCAACCCAUCGGAAAACCCAA-----------C-CCCCCACCCAAAUGAAACUCAA
...((((((..(...((((.....))))..)..))))))(((((...........)))))......-----------.-...................... ( -17.60)
>DroYak_CAF1 53796 81 - 1
CUCUCGAGGGGAUUUUCGAUUCUCUCGAU--UUUCUCGAUUUCCCGCAACCCAUCC-AAUGCCCAA-----------C-CCCCG-----AAUGAAACUCAA
...(((.((((....((((.....)))).--..............(((........-..)))....-----------)-)))))-----)........... ( -14.20)
>consensus
CUCUCGAGGGGAUUUUCGAUUUUCUCGAU__UUCCUCGAUUUCCCGCAACCCAUCGGAAAACCCAA___________C_CCCCCACCCAAAUGAAACUCAA
...((((((((....((((.....))))...)))))))).............................................................. (-13.31 = -13.12 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:02 2006